Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aspergillus_20niger_20[genbank_20GCA_5F001515345.1_202015-12-19] 669 sequences; 34,880,193 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq3 214 2e-50 seq28 96.9 4e-15 >seq3 Length=2393285 Score = 214 bits (236), Expect = 2e-50 Identities = 375/541 (69%), Gaps = 4/541 (1%) Strand=Plus/Minus Query 53243 GAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAAC 53302 ||||| ||| |||| ||| || |||||||| || |||||| | || || ||||||||| Sbjct 277064 GAGACCTACAACTTGATGTCTCAGAAGTACTTCACTCACGCCTCCCCGACTCTGTTCAAC 277005 Query 53303 GCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCG 53362 |||||||| || || ||| | | |||||||| || | |||||||| ||| Sbjct 277004 GCTGGTACTCCCCAGCCCCAGCTTGCCTCTTGCTTCCTCGTCGACATGAAGGAGGACAGC 276945 Query 53363 ATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGT 53422 || ||||| |||||||| || || ||| || || ||||||||| | | |||||| Sbjct 276944 ATTGACGGTATCTACGACACTCTGAAGACTTGCGCTATGATCTCCAAGACGGCCGGTGGT 276885 Query 53423 ATCGGTATCCAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGG 53481 |||||| | || ||| | | ||||| | | ||| | || || || ||||| Sbjct 276884 ATCGGTCTGAACGTGCACCG-CATCCGTTCTACTGGCTCCTACATTGGTGGTACCAACGG 276826 Query 53482 CGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAA 53541 | || | || | || |||||||| || |||||||||||||| ||| | ||||| | Sbjct 276825 TACCTCCAACGGTCTTGTTCCTATGCTTCGTGTCTTCAACAACACTGCCAGATACGTTGA 276766 Query 53542 CCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGA 53601 ||||||||| ||||| || | |||||||||||||| ||||| |||||| | || Sbjct 276765 CCAGGGTGGCAACAAGCGTCCCGGTGCTTTCGCCATCTACCTTGAGCCCTGGCACTCGGA 276706 Query 53602 CATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGA 53661 | | ||||| || || || ||| ||| || ||| | || ||| | | |||||| Sbjct 276705 TGTCTTCGAGTTCCTGGATCTCCGTAAGAACCACGGTAAGGAGGAGGTCAGAGCCCGTGA 276646 Query 53662 CCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGG 53720 ||||| ||| || ||||||| ||||| || |||||| | || ||| | ||| | Sbjct 276645 TCTGTTCTAC-GCCCTGTGGACCCCGGATCTGTTCATGAAGCGTGTTGAGGCGAACGGTG 276587 Query 53721 AGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGT 53780 | ||| ||| | ||||| ||||| ||| ||| | | |||||||||||| |||| Sbjct 276586 ACTGGACTCTGTTCTGCCCCAACGAAGCCCCTGGCTTGGCTGATGTCTACGGTGATGAGT 276527 Query 53781 T 53781 | Sbjct 276526 T 276526 Score = 125 bits (138), Expect = 8e-24 Identities = 301/448 (67%), Gaps = 13/448 (3%) Strand=Plus/Minus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||| | |||| || || || ||||| || || || ||||||| ||||| | Sbjct 275794 CGCAACAGCTTGCTGGTCGCTCCCATGCCCACTGCCAGTACCAGTCAGATCTTGGGCTTC 275735 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 |||||| |||||||| ||||| ||||||||||| ||||| | | || |||||| Sbjct 275734 AACGAGTGCTTCGAGCCTTACACCTCCAACATCTACTCCCGCCGTGTCTTGGCTGGTGAG 275675 Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCG 55663 || || ||||| || | ||||||||| | || | |||| Sbjct 275674 TTCCAGGTGGTCAACCCCTGGCTGCTGAAGGACCTGGTCGATCTCGGCCTGTGGTCGGAC 275615 Query 55664 CAGATCAAGA--CGGATATTGTGCGGAACGGGGGGTCCGTCCAGAA--TCTGGAGATTCC 55719 | || |||| || || | ||| || || || ||||||||||| || | ||| Sbjct 275614 AACATGAAGAACCGCATCAT-TGCTGAG-GGTGGTTCCGTCCAGAACATCCCCAACATCC 275557 Query 55720 TCTGCGTC-TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAG---AAGAGTCTGA 55775 | | | | |||||| | | ||| ||||||||||||||| | ||| | || ||| Sbjct 275556 CCAGTGACATCAAGGCGCTGTACAAGACGGTGTGGGAGATCTCCCAGCGCACGATCCTG- 275498 Query 55776 TTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCA 55835 | ||| || || |||||||||| ||| |||||||| ||||| || |||||| | Sbjct 275497 --CAGATGGCCGCGGACCGTGGTGCGTTCATTGACCAGTCTCAGTCCCTCAACATCCACC 275440 Query 55836 TGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGAC 55895 || || | || | ||| |||| | | | ||||||||| ||| ||||||| ||| | Sbjct 275439 TGAAGGAGCCCACCATGGGCAAGATCACCAGCATGCACTTTGCCGGTTGGAAGATGGGTC 275380 Query 55896 TCAAGACGGGTATGTACTATCTGCGGAC 55923 | |||||||| |||||||| ||||| || Sbjct 275379 TGAAGACGGGCATGTACTACCTGCGCAC 275352 >seq28 Length=242336 Score = 96.9 bits (106), Expect = 4e-15 Identities = 139/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 118998 CAACCTTGCTCATGTTGTCGGTCCAAGATTGCATGTAGATCTTCTT-----ACCATCACT 119052 ||| |||| |||||||||| ||||| | ||| |||| ||||||| || | || Sbjct 228212 CAATCTTGGTCATGTTGTCCGTCCATGTCTGCCTGTACTTCTTCTTCTGAGACGAGTCCT 228271 Query 119053 AATTTT-GATGTTAAATTTCGAACTGAACACGTTGGCTAGCTTGGCACCGTATCCGTTCC 119111 | ||| || | ||| | | ||| ||||| |||||||||||| | ||||| | Sbjct 228272 GAGTTTCGAGGGAAAACTCAGTGGAGAAAACGTTACAGAGCTTGGCACCGAAACCGTTAC 228331 Query 119112 GACCACCGGTCACGCGCTGCTCCTCGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAA 119171 ||||||||||||| ||||| | ||| | |||||||||| ||| | || || |||| Sbjct 228332 GACCACCGGTCACCTTCTGCTGCGTGTCATCGTAGTTGGAGGAGGTGAGGAGATGACCAA 228391 Query 119172 AGATGAGCTCGGGGA 119186 |||| || ||||||| Sbjct 228392 AGATCAGTTCGGGGA 228406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547211423906200