Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aspergillus_20niger_20[genbank_20GCA_5F001515345.1_202015-12-19] 669 sequences; 34,880,193 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq3 167 5e-36 seq1 118 2e-21 >seq3 Length=2393285 Score = 167 bits (184), Expect = 5e-36 Identities = 157/200 (79%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| |||||||||||||| || ||||||||||| || || | ||||| | ||||| Sbjct 1619545 AGGACGAGGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGACAGGGTACGGCCATCC 1619604 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || |||||||| || || || ||||| ||||| | || ||||||||| Sbjct 1619605 TCCAGCTGCTTTCCCGCGAAGATGAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCC 1619664 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| ||||| || ||||| |||||||| || ||||| || ||||| ||| Sbjct 1619665 TGAATCTTAGTCTTCACATTGTCGATAGTGTCAGAAGACTCCACCTCAAGGGTGATGGTC 1619724 Query 211083 TTTCCCGTGAGAGTCTTTAC 211102 ||||| || || ||||| || Sbjct 1619725 TTTCCGGTCAGGGTCTTGAC 1619744 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| |||||| ||| || |||||||| || || | || || | ||||||| Sbjct 1619089 AGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGCGTACGTCCATCT 1619148 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || |||||||| || || || || || || |||| || ||||| || Sbjct 1619149 TCCAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCCGGGGGAATGCCCTCCTTATCT 1619208 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| | || ||||| || ||||| || ||||| || ||||| || || |||||| Sbjct 1619209 TGAATCTTGTTCTTGACGTTATCAATGGTATCCGAGCTCTCCACCTCCAGCGTAATCGTC 1619268 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||||||||| || || | |||||| Sbjct 1619269 TTGCCGGTGAGAGTCTTCACGAAGATCTGCAT 1619300 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||||||||| || || || || || ||||| || || | | ||| | ||||| Sbjct 1619317 AGGACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGACAAGGTACGGCCATCC 1619376 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| |||||| || || ||||| | || || ||||| || |||| ||||||||||| Sbjct 1619377 TCCAACTGCTTACCAGCAAAGATCAAACGCTGCTGGTCCGGGGGAATGCCTTCCTTGTCT 1619436 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || ||||| ||||||||||| || |||||| || | ||||||||| Sbjct 1619437 TGAATCTTGGTCTTAACGTTATCGATGGTGTCGGAAGATTCAACTTCCAATGTGATCGTC 1619496 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| || || || | |||||| Sbjct 1619497 TTGCCCGTAAGAGTTTTGACGAAGATCTGCAT 1619528 Score = 138 bits (152), Expect = 3e-27 Identities = 147/193 (76%), Gaps = 6/193 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| ||||| ||||| || |||||||| || || |||||| | ||||| Sbjct 1619846 AGAACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCACTAAGGGTGCGGCCATCC 1619905 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || |||||||| || ||||| ||||| ||||| | || ||||| ||| Sbjct 1619906 TCCAGCTGCTTTCCAGCGAAGATCAGACGTTGCTGGTCGGGAGGGATGCCCTCCTTATCC 1619965 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079 |||||||| || || || |||||||| || ||| || |||||||| ||||| Sbjct 1619966 TGGATCTTGGTCTTAACATTGTCGATGGTATC---GCTCGACTCGACCTCGAGGGTGATG 1620022 Query 211080 GTCTTTCCCGTGA 211092 ||||| || |||| Sbjct 1620023 GTCTTGCCGGTGA 1620035 Score = 86.0 bits (94), Expect = 1e-11 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 178229 TACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATCATCGAGACCGGGAGCCTCA 178288 ||||| | |||||| | ||||| || || ||||||||| | | || || || || Sbjct 276505 TACTTCTCGTAGAGAGCGTCGAACTCATCACCGTAGACATCAGCCAAGCCAGGGGCTTCG 276564 Query 178289 TTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCACTCGTTTCATGAAGAGGTCAGAG 178348 ||||||||||| ||| |||| | ||||| ||| || || |||||||| || || | | Sbjct 276565 TTGGGGCAGAACAGAGTCCAGTCACCGTTCGCCTCAACACGCTTCATGAACAGATCCGGG 276624 Query 178349 GTCCAGATGGCATAGAAAATCTCTCTGGCTCT 178380 ||||| | ||| ||||| | || | |||||| Sbjct 276625 GTCCACAGGGCGTAGAACAGATCACGGGCTCT 276656 >seq1 Length=3905891 Score = 118 bits (130), Expect = 2e-21 Identities = 136/182 (75%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || ||||| | ||||| || |||||||| || ||||||||| Sbjct 455432 TTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAGATA 455491 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 || || || || || || || | || ||||||||||||||||| || ||||| ||| Sbjct 455492 AGACGCTGCTGATCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCG 455551 Query 211047 ATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACA 211103 |||||||| ||| || || ||||| || || ||||| |||||||| ||||| || Sbjct 455552 ATGGTGTC---GCTCGACTCGACGTCGAGGGTAATGGTCTTACCCGTGAGGGTCTTGACG 455608 Query 211104 AA 211105 || Sbjct 455609 AA 455610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159142064256185