Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aspergillus_20niger_20[genbank_20GCA_5F001515345.1_202015-12-19] 669 sequences; 34,880,193 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq3 143 6e-29 seq1 120 7e-22 seq2 84.2 5e-11 >seq3 Length=2393285 Score = 143 bits (158), Expect = 6e-29 Identities = 151/199 (76%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990 |||| || || || || ||||| || |||||||| |||||||| || ||||| |||| Sbjct 1619746 TCGTCAAGACCCTGACCGGAAAGACCATCACCCTTGAGGTGGAGTCTTCTGACACTATCG 1619687 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 | || || || |||||||||||||| || || |||||||| |||||||| || || | Sbjct 1619686 ACAATGTGAAGACTAAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAGCAGCGTCTCA 1619627 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 ||||||| ||||| ||||| || ||||| | || || | || || ||| ||||||| | Sbjct 1619626 TCTTCGCGGGAAAGCAGCTGGAGGATGGCCGTACCCTGTCTGACTACAACATCCAAAAGG 1619567 Query 178111 AATCAACACTGCATCTTGT 178129 |||| || || || || || Sbjct 1619566 AATCCACTCTTCACCTCGT 1619548 Score = 127 bits (140), Expect = 5e-24 Identities = 154/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| |||||||| || || || |||||||| | || || ||| || ||| Sbjct 1619525 CAGATCTTCGTCAAAACTCTTACGGGCAAGACGATCACATTGGAAGTTGAATCTTCCGAC 1619466 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| || |||||||| ||||| ||||| || || ||||||||||| Sbjct 1619465 ACCATCGATAACGTTAAGACCAAGATTCAAGACAAGGAAGGCATTCCCCCGGACCAGCAG 1619406 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | ||||| || || || ||| | || ||||| | || |||| |||| || ||| | Sbjct 1619405 CGTTTGATCTTTGCTGGTAAGCAGTTGGAGGATGGCCGTAC-CTTGTCCGACTACAACAT 1619347 Query 178103 CCAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||| || || || ||||| Sbjct 1619346 TCAGAAGGAATCGACCCTTCACCTTGT 1619320 Score = 116 bits (128), Expect = 9e-21 Identities = 141/191 (74%), Gaps = 6/191 (3%) Strand=Plus/Minus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCAGACACCATCGAGAACGTCA 177999 |||| || || || |||||||||||||| || ||| || |||||||| || || | Sbjct 1620035 TCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGAGC---GATACCATCGACAATGTTA 1619979 Query 178000 AACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCG 178059 | ||||| ||||| || || || |||||||| ||||||||||| || |||||||| | Sbjct 1619978 AGACCAAGATCCAGGATAAGGAGGGCATCCCTCCCGACCAGCAACGTCTGATCTTCGCTG 1619919 Query 178060 GAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACAC 178119 |||| ||||| || ||||| | || ||| || || ||| |||| || || || || | Sbjct 1619918 GAAAGCAGCTGGAGGATGGCCGCACCCTTAGTGACTACAACATCCAGAAGGAGTCTACTC 1619859 Query 178120 TGCATCTTGTT 178130 | || || ||| Sbjct 1619858 TCCACCTCGTT 1619848 >seq1 Length=3905891 Score = 120 bits (132), Expect = 7e-22 Identities = 142/191 (74%), Gaps = 6/191 (3%) Strand=Plus/Minus Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCAGACAC 177985 |||||| || || ||||| || || || || |||||||| || || ||| ||||| Sbjct 455611 TTTCGTCAAGACCCTCACGGGTAAGACCATTACCCTCGACGTCGAGTCGAGC---GACAC 455555 Query 177986 CATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACG 178045 |||||| |||||||| ||||| |||||||| || || ||||| ||||| ||||| || Sbjct 455554 CATCGACAACGTCAAGACCAAGATCCAGGACAAGGAGGGTATCCCCCCGGATCAGCAGCG 455495 Query 178046 ACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCA 178105 ||||||||||| || || ||||| || ||||| | || || ||| || ||| |||| Sbjct 455494 TCTTATCTTCGCTGGTAAGCAGCTTGAGGATGGCCGCACCCTGAGCGACTACAACATCCA 455435 Query 178106 AAAAGAATCAA 178116 || | || || Sbjct 455434 GAAGGTATGAA 455424 >seq2 Length=2822020 Score = 84.2 bits (92), Expect = 5e-11 Identities = 92/121 (76%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 178009 TTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGC 178068 ||||| |||| || || ||||| ||||||||||| || || |||||||| || || |||| Sbjct 1631817 TTCAG-ACAAGGAGGGTATCCCCCCGGACCAGCAGCGTCTGATCTTCGCTGGTAAGCAGC 1631875 Query 178069 TCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 |||| || || | |||||| | || || ||| |||| || || || || || || || | Sbjct 1631876 TCGAGGACGGCCGTACTCTTTCGGACTACAACATCCAGAAGGAGTCCACCCTCCACCTGG 1631935 Query 178129 T 178129 | Sbjct 1631936 T 1631936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203720882142786