Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aspergillus_20niger_20[genbank_20GCA_5F001715265.1_202016-08-29] 310 sequences; 36,172,237 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq248 244 9e-60 seq259 136 4e-27 seq2 129 5e-25 >seq248 Length=549880 Score = 244 bits (270), Expect = 9e-60 Identities = 493/729 (68%), Gaps = 2/729 (0%) Strand=Plus/Minus Query 23249 TACTTTTGGTACAACGCGTCAAATTCGGCACCGTA-ACAGTCGGCCAGGCCGGGCGATTG 23307 ||||| | ||| | ||||| || ||| ||||||| ||| || |||| ||| || | || Sbjct 22552 TACTTCTCGTAGAGGGCGTCGAACTCGTCACCGTAGACA-TCAGCCAAGCCAGGGGCTTC 22494 Query 23308 CATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGG 23367 | || || | ||| |||| || ||||| || |||| || |||||||| Sbjct 22493 GTTGGGGCAGAACAGAGTCCAGTCGCCGTTCGCCTCAACACGCTTCATGAACAGATCCGG 22434 Query 23368 TATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTT 23427 |||| || || |||||||| |||||||| | |||||||| || ||| |||||| Sbjct 22433 AGTCCACAGGGCATAGAACAGATCGCGGGCTCTGACCTCCTCCTTACCGTGGTTCTTACG 22374 Query 23428 CAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCC 23487 | |||| || || || || |||| ||||| ||||| ||||| | |||||| || || Sbjct 22373 GAGGTCCAGGAACTCGAAGACATCCGAGTGCCAGGGCTCAAGGTAGATGGCAAAAGCACC 22314 Query 23488 CGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCAT 23547 || | ||| ||||| ||||| || ||||| | ||| ||||||||| | || | ||||| Sbjct 22313 GGGACGCTTGTTGCCACCCTGGTCAACGTATCTGGCAGTGTTGTTGAAAACCCGAAGCAT 22254 Query 23548 CGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAAC 23607 || || ||||||||||| | ||| ||| | | || || | | || | Sbjct 22253 GGGAACAAGACCGTTGGAGGTACCGTTGGTGCCACCAATGTAAGATCCGGTAGAGCGGAT 22194 Query 23608 GTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAG 23667 | ||| |||| | ||| || || ||| | | || || ||||| ||||| |||| Sbjct 22193 GCGGTGCACGTTCAGACCAATACCACCGGCGGTCTTGGAGATCATAGCGCAAGTCTTCAA 22134 Query 23668 AGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACAT 23727 |||||||||||| || || ||||||||||| || | |||| | ||| || || | | Sbjct 22133 AGTGTCGTAGATACCGTCAATGCTGTCCTCCTTCATGTCGACGAGGAAGCAAGAGGCAAG 22074 Query 23728 TTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATT 23787 || | | ||| ||| | || |||||| |||||| |||||| || ||||| | Sbjct 22073 CTGAGGCTGGGGAGTACCAGCGTTGAACAGAGTCGGGGAGGCGTGAGTGAAGTACTTCTG 22014 Query 23788 CGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGC 23847 ||||| | | ||| || |||||||| || ||||| ||||| ||||| | ||| Sbjct 22013 GGACATCAAGTGGTAGGTCTCGATGGCCTTCTCGATGTCACTACCGTGGATACCAACGGC 21954 Query 23848 GACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATA 23907 || ||||||| || || || || | ||| || ||||| || ||||| || Sbjct 21953 AACACGCATCAGCAGGTGCTGGGGACGCTCAGCCACCTTTCCGTTGATCCGCAACAGGTA 21894 Query 23908 TGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTAT 23967 ||| || | || || || || || || ||| ||||| || ||||| |||| || || Sbjct 21893 TGACCGCTCCAGGGTCTTGAAGCCGAAGAAGTTGTAGTTGAAATCACGGTCGTATACAAT 21834 Query 23968 GGCCGAATT 23976 ||||| || Sbjct 21833 AGCCGAGTT 21825 >seq259 Length=165088 Score = 136 bits (150), Expect = 4e-27 Identities = 331/494 (67%), Gaps = 18/494 (4%) Strand=Plus/Minus Query 57909 ATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGG---CCACGTTC 57965 || ||||||||||| || ||| | || || ||||| | | || || | || ||| Sbjct 128092 ATTGCCAAGAAGGCCGATTGGGCCATTAAGTGGATCCAG---GACAGGGAGTCGACCTTC 128036 Query 57966 GCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCG 58025 || || | || | || ||||| ||||| || ||||| ||||| || ||| ||| || Sbjct 128035 GCTCAGCGTCTCGTTGCTTTCGCTGCCGTTGAGGGTATCTTCTTCTCCGGCTCCTTCGCT 127976 Query 58026 GCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTG 58085 | || || ||| | ||||| || || || ||||| || || || || ||||||| | Sbjct 127975 TCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTCACCTTCTCCAACGAGCTC 127916 Query 58086 ATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTC 58145 || || || ||||||||||| || || || || || ||||| ||| ||| ||| | Sbjct 127915 ATCTCTCGTGACGAGGGTCTGCACACCGACTTCGCTTGCCTGCTGTTCTCCCACCT---- 127860 Query 58146 AATAAACCGACGCGG--GATCGCATCTTG--GACATTATCACCGAGGCGGTCGCGATCGA 58201 | ||||| | | | | | | ||| ||||||||| |||||| |||| || || Sbjct 127859 GAACAACCGCCCCAGCAAACAGGTTGTTGAAGACATTATCGTCGAGGCCGTCGGCATTGA 127800 Query 58202 AAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGAT 58261 | ||||| | || || || || || || || |||| || |||||| | |||| Sbjct 127799 GCAGGAGTTCCTGACTGACGCTCTGCCCGTTGCTCTGCTGGGCATGAACTCCAAGCTGAT 127740 Query 58262 GTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACT--GATTGGAGAGCGT 58319 || ||||||| |||||||| || ||| | || || | | || | ||| || Sbjct 127739 GTGTCAGTACATCGAGTTTGTCGCGGACCGCCTGCTGGTGGCCCTCGGCAACAAGA-AGT 127681 Query 58320 CATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACA 58379 | |||||| | | || || || || || ||| | ||||||||| | ||| ||||| Sbjct 127680 -ACTACAACGCCACCAACCCCTTCGACTTCATGGAGTCGATCTCGCTGGCGGGTAAGACC 127622 Query 58380 AACTTTTTCGAAAA 58393 ||||| ||||| || Sbjct 127621 AACTTCTTCGAGAA 127608 >seq2 Length=1425683 Score = 129 bits (142), Expect = 5e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||||| || || || |||||||| | || |||||| | ||| Sbjct 869600 ATGCAGATCTTCGTCAAGACTCTCACGGGAAAGACGATCACATTGGAAGTTGAATCTTCC 869659 Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || |||| | | || ||| | | ||||||||||| | || || ||||| Sbjct 869660 GACACAATTGATAACGTTAAGACCAAGATTCAAG-ACAAGGAAGGCATCCCCCCGGACCA 869718 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || |||||||| || |||||||| || || || ||| || || Sbjct 869719 GCAGCGTCTCATCTTCGCTGGTAAGCAGTTGGAGGATGGCCGTACCTTGTCCGACTACAA 869778 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || |||||||| |||||||| || || ||| | || | || |||| Sbjct 869779 CATCCAGAAAGAATCCACTCTTCACCTTGTCCTTCGTCTCCGTGGTGGTA 869828 Score = 102 bits (112), Expect = 7e-17 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 31203 TCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCG 31262 |||| ||||| ||||| || || || |||||| | || || || | || |||| ||| Sbjct 869382 TCGTCAAGACCCTGACCGGAAAGACCATCACCCTTGAGGTGGAGTCTTCTGACACCATCG 869441 Query 31263 AAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTA 31321 | | || || || ||| | ||||||||| ||| | || || |||||||||||||| Sbjct 869442 ACAATGTGAAGACCAAGATTCA-GGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTG 869500 Query 31322 ATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAA 31381 || |||||||| || ||| |||| || || || || || ||||||||||| Sbjct 869501 ATCTTCGCTGGAAAGCAGCTGGAGGATGGCCGTACCCTGTCTGACTACAACATTCAAAAG 869560 Query 31382 GAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || ||||| || || ||| | ||| | || |||| Sbjct 869561 GAATCCACCCTTCACCTCGTCCTTCGTCTGCGTGGTGGTA 869600 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||||| || ||||| ||||| || | || || || || Sbjct 869828 ATGCAGATCTTCGTGAAGACTCTTACCGGCAAGACGATTACGCTGGAGGTGGAGAGCTCG 869887 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | || | ||||| || ||| | | | ||||| ||| | || || ||||| Sbjct 869888 GATACCATTGATAACGTCAAGACTAAGATTCAAG-ATAAGGAGGGCATTCCCCCGGACCA 869946 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 ||||||||| || |||||||| || ||||||||||| | | | || | |||||| | Sbjct 869947 GCAGCGTCTCATCTTCGCTGGTAAGCAGTTGGAAGA-TGGACGTACGCTCTCCGATTACA 870005 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||| || || || ||||| || ||||| || Sbjct 870006 ACATCCAGAAGGAGAGCACTCTGCACCTGGTGCT 870039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445764672655200