Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aspergillus_20niger_20[genbank_20GCA_5F001715265.1_202016-08-29] 310 sequences; 36,172,237 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq248 120 4e-22 seq259 107 3e-18 >seq248 Length=549880 Score = 120 bits (132), Expect = 4e-22 Identities = 576/904 (64%), Gaps = 20/904 (2%) Strand=Plus/Minus Query 71944 TCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGAC 72003 ||||||||||| || | ||| | || ||||| ||| || || || | || | | Sbjct 22534 TCGAACTCGTCACCGTAGACATCAGCCAAGCCAGGGGCTTCGTTGGGGCAGAACAGAGTC 22475 Query 72004 CACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 72062 || || || | | | || || ||||| || ||||| ||| |||| || || ||| || Sbjct 22474 CAGTCGCCGTTCGCCTCAACACGCTTCATGAACAGATCCGGAGTCCACAGGGC-ATAGAA 22416 Query 72063 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 72122 ||||| | || ||| |||||| || || ||||| || || |||||| | | Sbjct 22415 CAGATCGCGGGCTCTGACCTCCTCCTTACCGTGGTTCTTACGGAGGTCCAGGAACTCGAA 22356 Query 72123 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCC 72182 | ||| || ||||| || || | ||| ||||| | | | || || || ||||| || || Sbjct 22355 GACATCCGAGTGCCAGGGCTCAAGGTAGATGGCAAAAGCACCGGGACGCTTGTTGCCACC 22296 Query 72183 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 72242 ||| || | |||||| || ||||| || |||| | | ||| |||| || ||| ||||| Sbjct 22295 CTGGTCAACGTATCTGGCAGTGTTGTTGAAAACCCGAAGCATGGGAACAAGACCGTTGGA 22236 Query 72243 TGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGCTAATTGATAGA 72300 | ||| ||||| || || || ||| | | || || ||| || ||| Sbjct 22235 GGTACCGTTGGTGCCACCAATGTAAGATCCGGTAGAGCGGATGCGGTGCACGTT--CAGA 22178 Query 72301 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 72360 || || || || || | || ||||| | ||||| || || || || ||||| || Sbjct 22177 CCAATACCACCGGCGGTCTTGGAGATCATAGCGCAAGTCTTCAAAGTGTCGTAGATACCG 22118 Query 72361 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT---- 72416 || || || || ||| |||||| | || | ||| ||| | ||| | || Sbjct 22117 TCAATGCTGTCCTCCTTCATGTCGACGAGGA---AGCAAGAGGCAAGCTGA-GGCTGGGG 22062 Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 ||| || || || || | || || || ||||| || || | || | |||| | | Sbjct 22061 AGTACCAGCGTTGAACAGAGTCGGGGAGGCGTGAGTGAAGTACTTCTGGGACATCAAGTG 22002 Query 72477 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAA 72536 ||| ||||| || || || || || | || || || || || |||||||| | Sbjct 22001 GTAGGTCTCGATGGCCTTCTCGATGTCACTACCGTGGATACCAACGGCAACACGCATCAG 21942 Query 72537 CATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAA 72596 || ||||| || | ||| | | ||| || || ||||| ||| || |||| Sbjct 21941 CAGGTGCTGGGGACGCTCAGCCACCTTTCCGTTGATCCGCAACAGGTATGACCGCTCCAG 21882 Query 72597 AGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAATTG 72654 || || || || || ||||||| ||||| || || ||||| | |||| |||| || Sbjct 21881 GGTCTTGAAGCCGAAGAAGTTGTAGTTGAAA--TCACGGTCGTATACAATAGCCGAGTTA 21824 Query 72655 AGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACTTGAAATAATCGGAGAATGT 72714 || | ||| | ||| | | ||| || || |||| || || || | | || Sbjct 21823 AGCTCATCGGCGTGTTTCATGATTATTTCGTATGTCTCCTTTGATATCATTGGCGCAGGT 21764 Query 72715 TTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTA-AATAGttt 72773 | || || || || ||||||| | | | ||| || || || | || | || Sbjct 21763 TGGTTGTTCTTGGGGTTGACATAGTGGTAGAGATCTGAAATGAC-CAACGAGAACTGCTT 21705 Query 72774 ttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGG 72833 || || | |||||| || || || ||||| || | ||| || || ||||| || || || Sbjct 21704 CTTGGTCTGCTTGTGGAGGTTGGAAACGGCGATACGGGCAGCGAGGATGGCGTAGTCGGG 21645 Query 72834 ATGT 72837 |||| Sbjct 21644 ATGT 21641 >seq259 Length=165088 Score = 107 bits (118), Expect = 3e-18 Identities = 156/218 (72%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 42056 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAA 42115 |||| || || ||||| ||| |||||||||||| || | | || | |||||||| Sbjct 127869 AACAGCAGGCAAGCGAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAG 127928 Query 42116 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCA 42175 || ||||| || ||||| || |||||||| || ||||| || || || || || || || Sbjct 127929 AAGGTGAGACCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCGAAGGAGCCG 127988 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCT-CTCCATAACCG--GCA 42232 || |||||||| || || || || || || |||| || | || | | || | Sbjct 127989 GAGAAGAAGATACCCTCAACGGCAGCGAAAGCAACGAGACGCTGAGCGAAGGTCGACTCC 128048 Query 42233 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 42270 ||||| || |||||||| ||||||||||||||||| Sbjct 128049 CTGTCCTGGATCCACTTAATGGCCCAATCGGCCTTCTT 128086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671136599335600