Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aspergillus_20niger_20[genbank_20GCA_5F001715265.1_202016-08-29] 310 sequences; 36,172,237 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq248 143 3e-29 seq259 134 2e-26 >seq248 Length=549880 Score = 143 bits (158), Expect = 3e-29 Identities = 581/904 (64%), Gaps = 20/904 (2%) Strand=Plus/Minus Query 63138 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 63197 ||||||||||| || | |||| |||| ||||| ||| | || || | || | | Sbjct 22534 TCGAACTCGTCACCGTAGACATCAGCCAAGCCAGGGGCTTCGTTGGGGCAGAACAGAGTC 22475 Query 63198 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 63256 || || |||| ||| || || ||||| || ||||| ||| |||| || || ||| || Sbjct 22474 CAGTCGCCGTTCGCCTCAACACGCTTCATGAACAGATCCGGAGTCCACAGGGC-ATAGAA 22416 Query 63257 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63316 ||||| | || ||| ||||| || || ||||| || || |||||| | | Sbjct 22415 CAGATCGCGGGCTCTGACCTCCTCCTTACCGTGGTTCTTACGGAGGTCCAGGAACTCGAA 22356 Query 63317 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63376 | ||| || ||||| || || | ||| ||||| | | | || || || ||||| || || Sbjct 22355 GACATCCGAGTGCCAGGGCTCAAGGTAGATGGCAAAAGCACCGGGACGCTTGTTGCCACC 22296 Query 63377 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63436 ||| || | |||||| || ||||| || |||| | | ||| |||| || |||||| || Sbjct 22295 CTGGTCAACGTATCTGGCAGTGTTGTTGAAAACCCGAAGCATGGGAACAAGACCGTTGGA 22236 Query 63437 TATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGA 63494 |||| ||||| || || || ||| | | || || | | || ||| Sbjct 22235 GGTACCGTTGGTGCCACCAATGTAAGATCCGGTAGAGCGGATGCGGTGCACGTT--CAGA 22178 Query 63495 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCC 63554 || || || || || | || ||||| | ||||| || || ||||| |||||||| Sbjct 22177 CCAATACCACCGGCGGTCTTGGAGATCATAGCGCAAGTCTTCAAAGTGTCGTAGATACCG 22118 Query 63555 TCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT---- 63610 || ||||| || || |||||| | || | ||| ||| | ||| | || Sbjct 22117 TCAATGCTGTCCTCCTTCATGTCGACGAGGA---AGCAAGAGGCAAGCTGA-GGCTGGGG 22062 Query 63611 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63670 ||| || || || || | || || || ||||| || || | || | || | | | Sbjct 22061 AGTACCAGCGTTGAACAGAGTCGGGGAGGCGTGAGTGAAGTACTTCTGGGACATCAAGTG 22002 Query 63671 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63730 ||| ||||| || || || || || | || || || || || |||||||| | Sbjct 22001 GTAGGTCTCGATGGCCTTCTCGATGTCACTACCGTGGATACCAACGGCAACACGCATCAG 21942 Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63790 || |||||| || | ||| | | ||| ||| || ||||| ||| || |||| Sbjct 21941 CAGGTGCTGGGGACGCTCAGCCACCTTTCCGTTGATCCGCAACAGGTATGACCGCTCCAG 21882 Query 63791 AGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTG 63848 || || || || || ||||||| ||||| || || ||||| | |||| ||||||| Sbjct 21881 GGTCTTGAAGCCGAAGAAGTTGTAGTTGAAA--TCACGGTCGTATACAATAGCCGAGTTA 21824 Query 63849 AGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACTTGAAATAATCGGAGAATGT 63908 || | ||| | ||| | | ||| || || |||| || || || | | || Sbjct 21823 AGCTCATCGGCGTGTTTCATGATTATTTCGTATGTCTCCTTTGATATCATTGGCGCAGGT 21764 Query 63909 TTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTA-AATAGttt 63967 | || || || || ||||||| | | | ||| || || || | || | || Sbjct 21763 TGGTTGTTCTTGGGGTTGACATAGTGGTAGAGATCTGAAATGAC-CAACGAGAACTGCTT 21705 Query 63968 ttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGG 64027 || || | |||||| || || || ||||| || | ||| || || ||||| || || || Sbjct 21704 CTTGGTCTGCTTGTGGAGGTTGGAAACGGCGATACGGGCAGCGAGGATGGCGTAGTCGGG 21645 Query 64028 ATGT 64031 |||| Sbjct 21644 ATGT 21641 >seq259 Length=165088 Score = 134 bits (148), Expect = 2e-26 Identities = 162/218 (74%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 33295 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354 |||| || || ||||| ||| ||||||||||||||| | | || || |||||||| Sbjct 127869 AACAGCAGGCAAGCGAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAG 127928 Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414 || ||||| || ||||| || |||||||| || ||||| || ||||||||||| || || Sbjct 127929 AAGGTGAGACCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCGAAGGAGCCG 127988 Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCT-CTCCATAACCG--GCG 33471 || |||||||| || || || ||||| || |||| || | || | | || | Sbjct 127989 GAGAAGAAGATACCCTCAACGGCAGCGAAAGCAACGAGACGCTGAGCGAAGGTCGACTCC 128048 Query 33472 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 33509 ||||| || |||||||| ||||||||||||||||| Sbjct 128049 CTGTCCTGGATCCACTTAATGGCCCAATCGGCCTTCTT 128086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622944786079600