Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aspergillus_20niger_20[genbank_20GCA_5F001715265.1_202016-08-29] 310 sequences; 36,172,237 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq66 140 2e-28 seq34 109 4e-19 seq55 104 2e-17 >seq66 Length=683700 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 246534 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 246593 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 246594 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 246628 >seq34 Length=1774165 Score = 109 bits (120), Expect = 4e-19 Identities = 199/291 (68%), Gaps = 8/291 (3%) Strand=Plus/Plus Query 6201 TTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATT 6260 |||||||| ||||| ||| |||| | ||||| | ||||| ||||| |||||||| Sbjct 874607 TTCTACCGTTACAAGATGGAGCGCCTTCAGTCCAAGATTGAGGGCAAGGGCAACGGTATC 874666 Query 6261 AAAACCGTCATTGTCAACATGCCTGAA----GTCGCTAAGGCGCTCGGACGCCCTGCCAC 6316 || |||||| | |||||| ||||| |||||| || ||||| | || ||| | | Sbjct 874667 AAGACCGTCGTCGTCAAC----CTGAACTCGGTCGCTCAGTCGCTCAGTCGGCCTCCGTC 874722 Query 6317 CTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAA 6376 ||| || || || || || | ||| || || |||||| | | | | || | Sbjct 874723 TTACGTGATCAAGTACTTTGGCTTCGAGCTGGGTGCTCAGGCCAACGCCAAGCCCACCGA 874782 Query 6377 CGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGG 6436 || |||| ||| | ||||| | ||| | | ||||||| || |||| || ||||| Sbjct 874783 TGATCGCTGGATCATCAACGGTGCCCATGATGCCCCCAAGCTTCAAGACTATCTGGACGG 874842 Query 6437 CTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487 ||||||| |||||| |||||||| | |||| | || ||||| || || Sbjct 874843 CTTTATTTCCAAGTTCGTGCTGTGCAAGAAATGTAAGAATCCGGAAACGGA 874893 >seq55 Length=1047 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 599 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 658 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 659 GCCAATATTTAGCTTTA 675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334945934527610