Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aspergillus_20niger_20[genbank_20GCA_5F001715265.1_202016-08-29] 310 sequences; 36,172,237 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq2 105 6e-18 seq248 98.7 9e-16 >seq2 Length=1425683 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 45112 TTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGC 45171 |||| || ||||| | | ||| || ||||| || ||||| ||||| || |||||| Sbjct 870056 TTCCGCCACGGAGACGGAGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAATCGG 869997 Query 45172 TGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 || || ||| ||||| || || || ||| | || | || ||||||||||| | Sbjct 869996 AGAGCGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGGG 869937 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCG 45290 ||||||| || ||||||||||| || |||| || | || | ||| || || ||| Sbjct 869936 GAATGCCCTCCTTATCTTGAATCTTAGTCTTGA-CGTTATCAATGGTATCCGAGCTCTCC 869878 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || |||| ||| |||||||| ||||| || || || || ||||| Sbjct 869877 ACCTCCAGCGTAATCGTCTTGCCGGTAAGAGTCTTCACGAAGATCTGCAT 869828 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | || || || || || ||||| || ||||| || || ||| Sbjct 869829 ATACCACCACGGAGACGAAGGACAAGGTGAAGAGTGGATTCTTTCTGGATGTTGTAGTCG 869770 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| ||||| || || || ||| | || | || ||||||||||| Sbjct 869769 GACAAGGTACGGCCATCCTCCAACTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGG 869710 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || |||||||| || ||||||| | || || | | || | || | ||||||||||| || Sbjct 869709 GGGATGCCTTCCTTGTCTTGAA-TCTTGGTCTTAACGTTATCAATTGTGTCGGAAGATTC 869651 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | || | ||| || || || ||||| || || || || ||||| Sbjct 869650 AACTTCCAATGTGATCGTCTTTCCCGTGAGAGTCTTGACGAAGATCTGCAT 869600 >seq248 Length=549880 Score = 98.7 bits (108), Expect = 9e-16 Identities = 297/458 (65%), Gaps = 3/458 (1%) Strand=Plus/Plus Query 122889 ATCGAGGAAAAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTG 122948 ||| | | |||||| || || ||| || || |||| ||||| || || | || | Sbjct 21906 ATCAACGGAAAGGTGGCTGAGCGTCCCCAGCACCTGCTGATGCGTGTTGCCGTTGGTATC 21965 Query 122949 CACGGACGCGACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTC 123008 ||||| | |||||||| || || | ||| || ||| | |||||||| || || | ||| Sbjct 21966 CACGGTAGTGACATCGAGAAGGCCATCGAGACCTACCACTTGATGTCCCAGAAGTACTTC 22025 Query 123009 ACGCACGCGAGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGT 123068 || ||||| || ||| ||||| ||| || || ||||||| | | || || Sbjct 22026 ACTCACGCCTCCCCGACTCTGTTCAACGCTGGTACTCCCCAGCCTCAGCTTGCCTCTTGC 22085 Query 123069 TTTTTGCTCACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGC 123128 || | || | || || |||||||| ||||||||| || |||||| |||| Sbjct 22086 TTCCTCGTCGACATGAAGGAGGACAGCATTGACGGTATCTACGACACTTTGAAGACTTGC 22145 Query 123129 GCGTTGATTTCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGC 123188 || |||| ||||| | ||| || || || ||||||||||| | | | | Sbjct 22146 GCTATGATCTCCAAGACCGCCGGTGGTATTGGTCTGAACGTGCACCGCATCCGCTCTACC 22205 Query 123189 GGAAGCCGCATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTT 123248 ||| ||| | ||||| |||| | | || ||| || | ||||||| || ||| Sbjct 22206 GGATCTTACATTGGTGGCACCAACGGTACCTCCAACGGTCTTGTTCCCATGCTTCGGGTT 22265 Query 123249 TACAATAACGCCGTGCGGCACGTCGACCAGGGCGG---CAAACGCAAAGGCGCGATGGCG 123305 | ||| ||| | | | |||| |||||||| || ||| || || || | || Sbjct 22266 TTCAACAACACTGCCAGATACGTTGACCAGGGTGGCAACAAGCGTCCCGGTGCTTTTGCC 22325 Query 123306 ATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTT 123343 ||||| || || || |||||| ||||| | ||| || Sbjct 22326 ATCTACCTTGAGCCCTGGCACTCGGATGTCTTCGAGTT 22363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452001448487600