Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aspergillus_20niger_20[genbank_20GCA_5F001715265.1_202016-08-29] 310 sequences; 36,172,237 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq248 159 6e-34 seq259 122 2e-22 >seq248 Length=549880 Score = 159 bits (176), Expect = 6e-34 Identities = 374/557 (67%), Gaps = 12/557 (2%) Strand=Plus/Minus Query 221945 TAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACAC 222004 ||||| ||| |||| |||||||| | || ||| ||| || | ||| || Sbjct 22543 TAGAGGGCGTCGAACTCGTCACCGTAGACATCAGCCAAGCCAGGGGCTTCGTTGGGGCAG 22484 Query 222005 ATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGC 222064 | |||| |||||| ||| | | || | || |||||| || ||||| ||||||| Sbjct 22483 AACAGAGTCCAGTCGCCGTTCGCCTCAACACGCTTCATGAACAGATCCGGAGTCCACAGG 22424 Query 222065 GCCTGAAAGAGATCTCTGGTCCGCTG--CTCCTCCACGCCGTTGTTTTTCCTCAGATCCA 222122 || | || ||||| | || | ||| ||||||| |||| ||| || | || |||| Sbjct 22423 GCATAGAACAGATCGCGGG--CTCTGACCTCCTCCTTACCGTGGTTCTTACGGAGGTCCA 22366 Query 222123 AAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182 ||||| || | || | |||||| ||||| || |||| ||| | ||| ||||| |||| Sbjct 22365 GGAACTCGAAGACATCCGAGTGCCAGGGCTCAAGGTAGATGGCAAAAGCACCGGGACGCT 22306 Query 222183 TGTTGCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACC 222241 ||||||||||||| || || || ||| | |||||| | ||||| | || || Sbjct 22305 TGTTGCCACCCTGGTCAACGTATCT-GGCAGTGTTGTTGAAAACCCGAAGCATGGGAACA 22247 Query 222242 AGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTG 222301 || |||||||| |||||||||||| |||||| | ||| | | || | | | Sbjct 22246 AGACCGTTGGAGGTACCGTTGGTGCCACCAATGTAAGATCCGGTAGAGC---GGATGCGG 22190 Query 222302 -GCA--GACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTG 222358 ||| || || |||||||||||| || |||||||| ||||| |||| | |||| Sbjct 22189 TGCACGTTCAGACCAATACCACCGGCGGTCTTGGAGATCATAGCGCAAGTCTTCAAAGTG 22130 Query 222359 TCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGA 222418 || ||| || || || ||||||||| | || | || || ||||| | | |||| Sbjct 22129 TCGTAGATACCGTCAATGCTGTCCTCCTTCATGTCGACGAGGAAGCAAGAGGCAAGCTGA 22070 Query 222419 GATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGAC 222478 | | || | || ||||| ||||| || || |||||| || ||||| | ||| Sbjct 22069 GGCTGGGGAGTACCAGCGTTGAACAGAGTCGGGGAGGCGTGAGTGAAGTACTTCTGGGAC 22010 Query 222479 ATCAGATCGTACGTCTC 222495 |||| | ||| ||||| Sbjct 22009 ATCAAGTGGTAGGTCTC 21993 >seq259 Length=165088 Score = 122 bits (134), Expect = 2e-22 Identities = 326/499 (65%), Gaps = 25/499 (5%) Strand=Plus/Minus Query 25834 TGGGCCATGAAGTGGATCAACAGCCAGAGCG-CTACGTTTGGCGAGCGGCTGGTAGCCTT 25892 |||||||| ||||||||| | | ||| | | | || || | |||| || || || || Sbjct 128074 TGGGCCATTAAGTGGATCCAG-GACAGGGAGTCGACCTTCGCTCAGCGTCTCGTTGCTTT 128016 Query 25893 TGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCA 25952 ||||| || ||||| ||||| ||| ||| || || || ||||||||||||||||| | Sbjct 128015 CGCTGCCGTTGAGGGTATCTTCTTCTCCGGCTCCTTCGCTTCCATCTTCTGGCTCAAGAA 127956 Query 25953 GAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCT 26012 | || |||||| || || ||| ||||||||||||||| | ||||||||||| Sbjct 127955 GCGTGGTCTCATGCCTGGTCTCACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGTCT 127896 Query 26013 CCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAGA 26072 |||| || || || |||||||| | | | |||| || | |||| | || | Sbjct 127895 GCACACCGACTTCGCTTGCCTGCTGTTCTC---CCACCTG----AACAACCGCCCCAGCA 127843 Query 26073 GACCGTCT-------ACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNN 26125 || | | ||| |||| || ||||| || | || ||| ||||||| | Sbjct 127842 AACAGGTTGTTGAAGACATTATCGTC---GAGGCCGTCGGCATTGAGCAGGAGTTCCTGA 127786 Query 26126 NNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTG 26185 ||||||||||| || || ||| | || ||||| | Sbjct 127785 CTGACGCTCTGCCCGTTGCTCTGCTGGGCATGAACTCCAAGCTGATGTGTCAGTACATCG 127726 Query 26186 AGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGACTCTACAGTACGC-- 26242 ||| ||| || |||| ||||| ||| | || || | | ||||| |||| Sbjct 127725 AGTTTGTCGCGGACCGCCTGCTGGTGGC-CCTCGGCAACAAGAAGTACTACA--ACGCCA 127669 Query 26243 CTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAA 26302 | ||||| |||||||| ||||| || ||| ||| || |||||||||||||| || | Sbjct 127668 CCAACCCCTTCGACTTCATGGAGTCGATCTCGCTGGCGGGTAAGACCAACTTCTTCGAGA 127609 Query 26303 AGAGGGTCGGCGACTATCA 26321 || |||| || ||||| || Sbjct 127608 AGCGGGTAGGAGACTACCA 127590 Score = 93.3 bits (102), Expect = 8e-14 Identities = 164/235 (70%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| |||||||||||||||| | || |||||||||||| || || |||||| Sbjct 128487 ATCTGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCCGAGGAAATCGATCTG 128428 Query 25537 GCCAAGGACATGGACGGCTGGTA----CGCTCTATCCAAAGACGAGCAGCATTTTCTCAA 25592 ||||||| || ||| |||| | ||| || | | ||||||| | || || Sbjct 128427 TCCAAGGATTTGCACGACTGGCACAACCGC-CTGAACGACGACGAGCGCTACTTCATCTC 128369 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 |||| | || ||||| || ||||| ||||| || || |||||||| || |||| | Sbjct 128368 CCACGTTCTCGCGTTCTTCGCTGCCTCCGATGGCATTGTCAACGAGAACCTTGTCGAGCG 128309 Query 25653 ATTCACCAGGGAAGTGCA-GTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 |||| | | || || || || | | ||||| || |||||||| |||||||| Sbjct 128308 CTTCAGCGGCGAGGTCCAGGTTCCT-GAGGCTCGTTGCTTCTACGGATTCCAGAT 128255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928841200726400