Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aspergillus_20niger_20[genbank_20GCA_5F001715265.1_202016-08-29] 310 sequences; 36,172,237 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq248 181 1e-40 seq2 105 6e-18 >seq248 Length=549880 Score = 181 bits (200), Expect = 1e-40 Identities = 477/714 (67%), Gaps = 23/714 (3%) Strand=Plus/Minus Query 139306 TACTTTTCGTAGAGTTCGTCGAA-TCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTT 139364 ||||| |||||||| ||||||| |||| |||||||| | |||| | | | | ||| Sbjct 22552 TACTTCTCGTAGAGGGCGTCGAACTCGT-CACCGTAGACATCAGCCA-AGCCAGGGGCTT 22495 Query 139365 -GTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCG 139423 || || || | || | ||| |||||||||||| || ||| ||||||||||||||| Sbjct 22494 CGTTGGGGCAGAACAGAGTCCAGTCGCCGTTCGCCTCAACACGCTTCATGAACAGATCCG 22435 Query 139424 GAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCT--TCCGAACCCATGTTACG 139481 || |||||| || | | || |||||| || ||| | || ||| ||| ||| Sbjct 22434 GAGTCCACAGGGCATAGAACAGATCGCGGGC--TCTGACCTCCTCCTTACCGTGGTTC-- 22379 Query 139482 TTTC--ATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATT 139539 || | | || ||||| || || || || | |||||| || || || |||||||| | Sbjct 22378 TTACGGAGGTCCAGGAACTCGAAGACATCCGAGTGCCAGGGCTCAAGGTAGATGGCAAAA 22319 Query 139540 GCGCCTTTCCGTTTG---CCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGC 139596 || || || ||| ||||| || || |||| || ||| || ||||| || || Sbjct 22318 GCACCGGGACGCTTGTTGCCACCCTGGTCAACGTATCTGGCAGTGTTGTTGAAAACCCGA 22259 Query 139597 AACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATGGGACTGTTGCG--AG 139654 | ||| || | |||||| | | || |||||||||| || ||| | | | || || Sbjct 22258 AGCATGGGAACAAGACCGTTGGAGGTACCGTTGGTGCCACCAATGTAA--GATCCGGTAG 22201 Query 139655 CTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAAT 139714 |||| | || || || | || || || ||| | ||||| || | | ||||| Sbjct 22200 AGCGGATGCGGTGCACGTTCAGACCAATACCACCGGCGGTCTTGGAGATCATAGCGCAAG 22141 Query 139715 CGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATG 139774 || || ||||| ||||| |||||||| |||| ||| ||| || ||||| | Sbjct 22140 TCTTCAAAGTGTCGTAGATACCGTCAATGCTGTCCTCCTTCATGTCGACGAGGAAGCAAG 22081 Query 139775 ACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACA 139834 | | ||| || || | || || || |||||||| || ||||| ||||| Sbjct 22080 AGGCAAGCTGAGGCTGGGGAGTACCAGCGTTGAACAGAGTCGGGGAGGCGTGAGTGAAGT 22021 Query 139835 TTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATAC 139894 | | |||||||| | ||| || |||||||| || | || || || |||||||||| Sbjct 22020 ACTTCTGGGACATCAAGTGGTAGGTCTCGATGGCCTTCTCGATGTCACTACCGTGGATAC 21961 Query 139895 CGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttt 139954 | || | || |||||||||| || ||| || || |||||| || | ||| Sbjct 21960 CAACGGCAACACGCATCAGCAGGTGCTGGGGACGCTCAGCCACCTTTCCGTTGATCCGCA 21901 Query 139955 tCAG--ATAACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATC 140006 ||| || |||| ||| ||||||||| |||| ||| | | ||||||||||| Sbjct 21900 ACAGGTATGACCG--CTCCAGGGTCTTGAAGCCGAAGAAGTTGTAGTTGAAATC 21849 >seq2 Length=1425683 Score = 105 bits (116), Expect = 6e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || | ||||| ||| | || Sbjct 869600 ATGCAGATCTTCGTCAAGACTCTCACGGGAAAGACGATCACATTGGAAGTTGAATCTTCC 869659 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || |||| ||| || ||||| |||||||| ||||| || || || || || Sbjct 869660 GACACAATTGATAACGTTAAGAC-CAAGATTCAAGACAAGGAAGGCATCCCCCCGGACCA 869718 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| | ||||| || || || ||| |||||||| | | | |||| || || || Sbjct 869719 GCAGCGTCTCATCTTCGCTGGTAAGCAGTTGGAGGATGGCCGTACCTTGTCCGACTACAA 869778 Query 24883 CATTCAAAAGGAATCGACACTACAC 24907 ||| || || ||||| || || ||| Sbjct 869779 CATCCAGAAAGAATCCACTCTTCAC 869803 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778 || || || ||||| || || || || || || || || | | ||||| | || | Sbjct 869387 AAGACCCTGACCGGAAAGACCATCACCCTTGAGGTGGAGTCTTCTGACACCATCGACAAT 869446 Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || || ||||| || ||||| || || || || || || || || ||| ||||||| Sbjct 869447 GTGAAGACCAAGATTCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTGATCTTC 869506 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCG 24898 || || || |||||||||||| | | | |||| || || ||||||||||||||||| Sbjct 869507 GCTGGAAAGCAGCTGGAGGATGGCCGTACCCTGTCTGACTACAACATTCAAAAGGAATCC 869566 Query 24899 ACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||| | || | || |||| || || Sbjct 869567 ACCCTTCACCTCGTCCTTCGTCTGCGTGGTGG 869598 Score = 84.2 bits (92), Expect = 2e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 24726 TAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGA-AACGGTAAAA 24784 ||||||| || || || || ||||| || || ||| ||| || | || |||| || | Sbjct 869093 TAACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGCGATACCATCGACAACGTCAAGA 869152 Query 24785 CAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGG 24844 | || |||||| || || || || || |||||||| || || ||| ||||||| || || Sbjct 869153 CCAA-GATCCAGGATAAGGAGGGCATCCCTCCCGACCAGCAGCGTCTGATCTTCGCGGGA 869211 Query 24845 AAACAGCTGGAGGAT 24859 || |||||||||||| Sbjct 869212 AAGCAGCTGGAGGAT 869226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449895856646800