Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aspergillus_20niger_20[genbank_20GCA_5F001715265.1_202016-08-29] 310 sequences; 36,172,237 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq259 102 8e-17 seq216 91.5 1e-13 seq2 84.2 2e-11 >seq259 Length=165088 Score = 102 bits (112), Expect = 8e-17 Identities = 159/225 (71%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 47046 GAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGC 47105 ||||| || |||| || ||||||| | |||| || |||||||| || |||||||| Sbjct 127816 GAGGCCGTCGGCATTGAGCAGGAGTTCCTGACTGACGCTCTGCCCGTTGCTCTGCTGGGC 127757 Query 47106 ATGAACGCACAGTCTATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAG 47165 |||||| | || ||||| | || || |||||||| ||||| || ||| ||||| Sbjct 127756 ATGAACTCCAAGCTGATGTGTCAGTACATCGAGTTTGTCGCGGACCGCCTGCTGGTGGCC 127697 Query 47166 CTCGGACAAC-CGAAATATTTTAATGCTCGTAATCCGTTTGAGTTTATGAACAACATTTC 47224 ||||| |||| ||| || | || || || || || || || ||| | || || Sbjct 127696 CTCGG-CAACAAGAAGTACTACAACGCCACCAACCCCTTCGACTTCATGGAGTCGATCTC 127638 Query 47225 GCTCGAGGGCAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGTA 47269 ||| | ||| || ||||| || |||||||| || || ||||| || Sbjct 127637 GCTGGCGGGTAAGACCAACTTCTTCGAGAAGCGGGTAGGAGACTA 127593 >seq216 Length=569298 Score = 91.5 bits (100), Expect = 1e-13 Identities = 99/129 (77%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 51741 TTGCCCAAGTCGCCGACGTGGCGCATCGCCGCGTTCGG-AGCGCCGTGGTCGCTGCCGGT 51799 ||||| | ||| |||||||| ||| ||| || |||| ||| |||||| ||||| Sbjct 456225 TTGCCAAGGTCACCGACGTGACGC-TCGTCGTCCTCGGGAGCACCGTGGGTCTTGCCGAA 456283 Query 51800 GGGGTTGAAGTGTTCGCCCGCCGACGTGCAGCCGTTGCTGGTGTCGCCGAATTCGTGCAC 51859 |||||||||||| ||| || || |||||||||||| || |||| ||||| | ||| || Sbjct 456284 GGGGTTGAAGTGAGGGCCAGCGGAGGTGCAGCCGTTGGTGTTGTCACCGAACTGGTGGAC 456343 Query 51860 GTGGAATCC 51868 |||||| || Sbjct 456344 GTGGAAGCC 456352 >seq2 Length=1425683 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || ||||| || |||||||||||| || |||||| ||| || | ||| ||||| | Sbjct 869793 GATTCTTTCTGGATGTTGTAGTCGGACAAGGTACGGCCATCCTCCAACTGCTTACCAGCG 869734 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || || || || |||||||| || || | | | || || | ||| Sbjct 869733 AAGATGAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTGTC-TTGAATCTTGGTCTTAAC 869675 Query 132050 -TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 132108 | || | || |||| | || ||||| | || | ||| || || || ||||| || Sbjct 869674 GTTATCAATTGTGTCGGAAGATTCAACTTCCAATGTGATCGTCTTTCCCGTGAGAGTCTT 869615 Query 132109 TATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 869614 GACGAAGATCTGCAT 869600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476609353131600