Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aspergillus_20niger_20[genbank_20GCA_5F001715265.1_202016-08-29] 310 sequences; 36,172,237 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq248 159 4e-34 seq160 100 4e-16 seq259 98.7 1e-15 >seq248 Length=549880 Score = 159 bits (176), Expect = 4e-34 Identities = 584/913 (64%), Gaps = 66/913 (7%) Strand=Plus/Minus Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 111289 |||||||| | || || | ||||| ||||| ||||||| | | ||||||| | Sbjct 22835 GGAAGGGCAAGAGAGGCAAGGTTGCAGACAGCAACCTCATCCGGAGCACTGTACTCAATG 22776 Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349 || || || || | |||||| || || || || | ||||| ||||| ||||||||| Sbjct 22775 ATCTCAGTGCAGAGGTTGGAGCTACGGATGGTTCCGAGGTTCTTCTGGTTGCTCTTCTTG 22716 Query 111350 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATA 111409 ||||| ||||||||||| |||||| |||| | || ||||| ||||| | | |||||| Sbjct 22715 TTGCAAGCATCCTTGTACAGCATGAAGGGGTTACCAGTCTCGGTCTGAGCCTCCAGAATA 22656 Query 111410 GCCTTCCA-AACATCGGCG----GCTGGTACAATGGCGTTGGCC--------CGTCCCTC 111456 || | ||| | | || | | | |||||| | ||| |||| ||| ||| Sbjct 22655 GCGTACCAGAGCTTCTGAGCCTTGATGGTACGACGGCCACGGCCTTCCTTCTCGTACCTA 22596 Query 111457 C----------GCCT--------------------------CGTACTTTGTGTAGAGGGC 111480 | || | | ||||| ||||||||| Sbjct 22595 CAATACTATTAGCATGAGTTGAGAATACACGAACCAACAAACTTACTTCTCGTAGAGGGC 22536 Query 111481 TTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGA 111540 || ||||| ||||| | || | | || || || | || || ||||| |||| Sbjct 22535 GTCGAACTCGTCACCGTAGACATCAGCCAAGCCAGGGGCTTCGTTGGGGCAGAACAGAGT 22476 Query 111541 CCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAA 111600 ||| | || ||||||| ||||||||||| || || ||| ||||||||| | || Sbjct 22475 CCAGTCGCCGTTCGCCTCAACACGCTTCATGAACAGATCCGGAGTCCACAGGGCATAGAA 22416 Query 111601 GAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCA 111659 ||||| | | | || |||| || | ||| ||||| || | || |||||||| | Sbjct 22415 CAGATCGCGGGCTCTGA-CCTCCTCCTTACCGTGGTTCTTACGGAGGTCCAGGAACTCGA 22357 Query 111660 TGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------C 111713 || ||||| |||||| |||||||| |||| || | || || ||||| | Sbjct 22356 AGACATCCGAGTGCCAGGGCTCAAGGTAGATGGCAAAAGCACC---GGGACGCTTGTTGC 22300 Query 111714 CAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCAT 111773 || | || | || || | || ||| ||| || || |||||||| |||| || ||| | Sbjct 22299 CACCCTGGTCAACGTATCTGGCAGTGTTGTTGAAAACCCGAAGCATGGGAACAAGACCGT 22240 Query 111774 CTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCA 111833 || ||| || || || | ||| |||| | | | | || | || || Sbjct 22239 TGGAGGTACCGTTGGTGCCACCAATGTAAGATCCGGTAGAGCGGATGCGGTGCACGTTCA 22180 Query 111834 TCCCAATACCCCCAGCCCACTTTGAGAT--TTGCGCACACTCCGTAAGAGTTCCATAGAT 111891 |||||||| || || ||| ||||| | ||||| | | | | | ||| | ||||| Sbjct 22179 GACCAATACCACCGGCGGTCTTGGAGATCATAGCGCA-AGT-CTTCAAAGTGTCGTAGAT 22122 Query 111892 ACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGG 111951 ||||| || ||||||||| || ||| ||||||||| || | ||| || || Sbjct 22121 ACCGTCAATGCTGTCCTCCTTCATGTCGACGAGGAAGCAAGAGGCAAGCTGAGGCTGGGG 22062 Query 111952 TGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGT 112010 |||||||| ||||| || || || | |||||| |||| ||| | ||||||||| || Sbjct 22061 AGTACCAGCGTTGAACAGAGTCGGGGAGGCGTGAGTGAA-GTACTTCTGGGACATCAAGT 22003 Query 112011 CGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGA 112070 ||| ||||| | | | || ||||| |||||||| || | || || ||||| | Sbjct 22002 GGTAGGTCTCGATGGCCTTCTCGATGTCACTACCGTGGATACCAACGGCAACACGCATCA 21943 Query 112071 ACATGTACTGTGG 112083 || || ||| || Sbjct 21942 GCAGGTGCTGGGG 21930 >seq160 Length=705468 Score = 100 bits (110), Expect = 4e-16 Identities = 161/227 (71%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 11630 GCATCAATCTCATCAATGAAGACAATACATGG--TTGATTTTCGCGGGCGATTTCAAAGA 11687 |||||||| ||||| ||||||| ||| || || | ||||| |||| || | | || | Sbjct 91644 GCATCAATTTCATCGATGAAGATAATGCAGGGCGTCGATTTCCGCG--CGTTGGCGAACA 91701 Query 11688 GATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAG- 11746 |||| ||||| | | ||| ||||| ||||||||||| ||||| | | || | Sbjct 91702 GATCACGAACTCGGGAAGGACCGACACCGACAAACATCTCGACAAACTCCGAACCACTGA 91761 Query 11747 CACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCC 11806 |||| || ||| || || |||||||| || |||| ||| || | ||||| || Sbjct 91762 CACT-GAAGAAGGGCACGCCGGATTCACCAGCCGTGGCCTTGGCAAGTAACGTCTTACCG 91820 Query 11807 GTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC 11853 ||||| || ||||| |||| ||| || |||||||| |||||||| Sbjct 91821 GTACCCGGAGGACCCGAAAGAATGGCACCACGGGGGATTTTGGCACC 91867 >seq259 Length=165088 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| |||||||| || || || || || || || |||||| ||||| ||||||||||| Sbjct 127892 GTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTGAGACCAGGCATGAGACC 127951 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| | || | ||| || |||||||||||||||||||| || Sbjct 127952 ACGCTTCTTGAGCCAGAAGATGGAAGCGAAGGAGCCGGAGAAGAAGATACCCTCAACGGC 128011 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTG-CATCAAACCATTTCATTG 122848 || || |||| || || | ||||||| ||| | || | | | ||| || || | Sbjct 128012 AGCGAAAGCAACGAGACGCTGAGCGAAGG-TCGACTCCCTGTCCTGGATCCACTTAATGG 128070 Query 122849 CCCATTTCGCCTTCTTCTCAATACATGGTAC 122879 |||| | |||||||| |||| || || || Sbjct 128071 CCCAATCGGCCTTCTTGGCAATGCAGGGGAC 128101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628029566376000