Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aspergillus_20niger_20[genbank_20GCA_5F001741885.1_202016-09-21] 319 sequences; 34,635,689 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq2 113 1e-19 >seq2 Length=188096 Score = 113 bits (124), Expect = 1e-19 Identities = 170/238 (71%), Gaps = 4/238 (2%) Strand=Plus/Plus Query 230414 AGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAACTTATG 230472 |||||||| | ||||||| | || || || || | ||||||||| | | || ||| Sbjct 160324 AGGAGTTCCTGACTGACGCTCTGCCC-GTTGCTCTGCTGGGCATGAACTCCAAGCTGATG 160382 Query 230473 GGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTG 230532 | ||||||||||| || || || |||||| | | || || || || || |||| Sbjct 160383 TGTCAGTACATCGAGTTTGTCGCGGACCGCCTGCTGGTGGCCCTCGGCAACAAGAAGTAC 160442 Query 230533 TACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAAC 230592 |||||| | | |||||||| | || |||||| || ||||| || ||||||||| Sbjct 160443 TACAACGCCACCAACCCCTTCGACTTCATGGAGTCGATCTCGCTGGCGGGTAAGACCAAC 160502 Query 230593 TTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG--AAGCCCGAAGA 230648 |||||||| ||||| || | ||||| |||| | ||||||| ||| ||| |||||| Sbjct 160503 TTCTTCGAGAAGCGGGTAGGAGACTACCAGAAGGCTGGTGTCATGGCCAGCACGAAGA 160560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057819676474970