Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aspergillus_20niger_20[genbank_20GCA_5F001741885.1_202016-09-21] 319 sequences; 34,635,689 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq59 107 2e-18 seq315 96.9 4e-15 seq274 86.0 7e-12 >seq59 Length=229715 Score = 107 bits (118), Expect = 2e-18 Identities = 158/220 (72%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | ||||| |||| ||||||||||| || || |||||||| | || || || | Sbjct 32632 ACGGAGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAATCGGAGAGCGTACGTCC 32573 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || | ||||||||||||||| ||||| ||||||||||| | || | || |||||| Sbjct 32572 ATCTTCCAACTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTT 32513 Query 43088 GTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCG 43143 | | ||| | || || |||| | | | || || |||| ||||| || | || Sbjct 32512 AT-CTTGAATCTTAGTCTTGACGTTATCAATGGTATCCGAGCTC---TCCACCTCCAGCG 32457 Query 43144 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || || ||||| || || ||||| || ||||| ||||| Sbjct 32456 TAATCGTCTTGCCGGTAAGAGTCTTCACGAAGATCTGCAT 32417 Score = 96.9 bits (106), Expect = 4e-15 Identities = 131/180 (73%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||||||||| ||||| |||| ||| || || | || || |||||||| |||||||| Sbjct 32151 TCCTTTTGAATGTTGTAGTCAGACAGGGTACGGCCATCCTCCAGCTGCTTTCCAGCGAAG 32092 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGT 43111 || || ||||||||||| | || | || |||||||||| ||| | || || || | | Sbjct 32091 ATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC-TGAATCTTGGTCTTCACATT 32033 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | ||||| || ||||| || | |||||||| || || || || ||||| || Sbjct 32032 GTCGATGGTGTCAGAAGACTCCACCTCAAGGGTGATGGTCTTTCCGGTCAGGGTCTTGAC 31973 Score = 86.0 bits (94), Expect = 7e-12 Identities = 122/169 (72%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| ||| || || || | || || |||||||| || ||||| Sbjct 31851 CTCCTTCTGGATGTTGTAGTCACTAAGCGTGCGGCCATCCTCCAGCTGCTTTCCGGCGAA 31792 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||||| || | || |||||| ||| ||| || |||| ||| Sbjct 31791 GATCAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTATCCTGGATCTTGGTCTTGA-CGT 31733 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 43159 | | | || ||||| || || || |||| |||||||| ||||| || Sbjct 31732 TGTCGATGGTATCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 31684 Score = 82.4 bits (90), Expect = 9e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 || || || || ||||| || | || || || | || || | ||||||||||||||| Sbjct 32379 TCTTTCTGGATGTTGTAGTCGGACAAGGTACGGCCATCCTCCAACTGCTTACCAGCGAAG 32320 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCG-T 43111 || | ||||||||||| | || | || ||||||| | ||| | || || | | || | Sbjct 32319 ATCAAACGCTGCTGGTCCGGGGGGATGCCTTCCTTGT-CTTGAATCTTGGTCTTAACGTT 32261 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||| ||||| || || | ||||| || || ||||| || ||||| || Sbjct 32260 ATCAATTGTGTCGGAAGATTCAACTTCCAATGTGATCGTCTTTCCCGTGAGAGTCTTGAC 32201 Query 43172 AAAGATTTGCAT 43183 ||||| ||||| Sbjct 32200 GAAGATCTGCAT 32189 >seq315 Length=240848 Score = 96.9 bits (106), Expect = 4e-15 Identities = 132/182 (73%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 |||| || || ||||| || ||| || || | || || ||||||||||||||||| | Sbjct 199826 CCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAGA 199885 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113 | || |||||||| || | || | | |||||||||| ||| || |||| ||| | Sbjct 199886 TAAGACGCTGCTGATCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGTCTTGA-CGTTG 199944 Query 43114 -CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | ||||||||||| || || |||| || ||||| || ||||| || ||||| || Sbjct 199945 TCGATGGTGTCGCTCGACTCGACGTCGAGGGTAATGGTCTTACCCGTGAGGGTCTTGACG 200004 Query 43173 AA 43174 || Sbjct 200005 AA 200006 >seq274 Length=270511 Score = 86.0 bits (94), Expect = 7e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 |||||| || | ||| |||||| || || ||||| || | ||||| || |||| || Sbjct 267172 CACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTACGGCCGTCCTC 267113 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090 ||||||||||||||||| || || ||||||||||| | || | | ||||||||| Sbjct 267112 GAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTC 267056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571815319877320