Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aspergillus_20niger_20[genbank_20GCA_5F001741885.1_202016-09-21] 319 sequences; 34,635,689 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq74 120 4e-22 seq2 107 3e-18 >seq74 Length=773240 Score = 120 bits (132), Expect = 4e-22 Identities = 576/904 (64%), Gaps = 20/904 (2%) Strand=Plus/Plus Query 71944 TCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGAC 72003 ||||||||||| || | ||| | || ||||| ||| || || || | || | | Sbjct 276771 TCGAACTCGTCACCGTAGACATCAGCCAAGCCAGGGGCTTCGTTGGGGCAGAACAGAGTC 276830 Query 72004 CACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 72062 || || || | | | || || ||||| || ||||| ||| |||| || || ||| || Sbjct 276831 CAGTCGCCGTTCGCCTCAACACGCTTCATGAACAGATCCGGAGTCCACAGGGC-ATAGAA 276889 Query 72063 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 72122 ||||| | || ||| |||||| || || ||||| || || |||||| | | Sbjct 276890 CAGATCGCGGGCTCTGACCTCCTCCTTACCGTGGTTCTTACGGAGGTCCAGGAACTCGAA 276949 Query 72123 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCC 72182 | ||| || ||||| || || | ||| ||||| | | | || || || ||||| || || Sbjct 276950 GACATCCGAGTGCCAGGGCTCAAGGTAGATGGCAAAAGCACCGGGACGCTTGTTGCCACC 277009 Query 72183 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 72242 ||| || | |||||| || ||||| || |||| | | ||| |||| || ||| ||||| Sbjct 277010 CTGGTCAACGTATCTGGCAGTGTTGTTGAAAACCCGAAGCATGGGAACAAGACCGTTGGA 277069 Query 72243 TGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGCTAATTGATAGA 72300 | ||| ||||| || || || ||| | | || || ||| || ||| Sbjct 277070 GGTACCGTTGGTGCCACCAATGTAAGATCCGGTAGAGCGGATGCGGTGCACGTT--CAGA 277127 Query 72301 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 72360 || || || || || | || ||||| | ||||| || || || || ||||| || Sbjct 277128 CCAATACCACCGGCGGTCTTGGAGATCATAGCGCAAGTCTTCAAAGTGTCGTAGATACCG 277187 Query 72361 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT---- 72416 || || || || ||| |||||| | || | ||| ||| | ||| | || Sbjct 277188 TCAATGCTGTCCTCCTTCATGTCGACGAGGA---AGCAAGAGGCAAGCTGA-GGCTGGGG 277243 Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 ||| || || || || | || || || ||||| || || | || | |||| | | Sbjct 277244 AGTACCAGCGTTGAACAGAGTCGGGGAGGCGTGAGTGAAGTACTTCTGGGACATCAAGTG 277303 Query 72477 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAA 72536 ||| ||||| || || || || || | || || || || || |||||||| | Sbjct 277304 GTAGGTCTCGATGGCCTTCTCGATGTCACTACCGTGGATACCAACGGCAACACGCATCAG 277363 Query 72537 CATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAA 72596 || ||||| || | ||| | | ||| || || ||||| ||| || |||| Sbjct 277364 CAGGTGCTGGGGACGCTCAGCCACCTTTCCGTTGATCCGCAACAGGTATGACCGCTCCAG 277423 Query 72597 AGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAATTG 72654 || || || || || ||||||| ||||| || || ||||| | |||| |||| || Sbjct 277424 GGTCTTGAAGCCGAAGAAGTTGTAGTTGAAA--TCACGGTCGTATACAATAGCCGAGTTA 277481 Query 72655 AGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACTTGAAATAATCGGAGAATGT 72714 || | ||| | ||| | | ||| || || |||| || || || | | || Sbjct 277482 AGCTCATCGGCGTGTTTCATGATTATTTCGTATGTCTCCTTTGATATCATTGGCGCAGGT 277541 Query 72715 TTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTA-AATAGttt 72773 | || || || || ||||||| | | | ||| || || || | || | || Sbjct 277542 TGGTTGTTCTTGGGGTTGACATAGTGGTAGAGATCTGAAATGAC-CAACGAGAACTGCTT 277600 Query 72774 ttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGG 72833 || || | |||||| || || || ||||| || | ||| || || ||||| || || || Sbjct 277601 CTTGGTCTGCTTGTGGAGGTTGGAAACGGCGATACGGGCAGCGAGGATGGCGTAGTCGGG 277660 Query 72834 ATGT 72837 |||| Sbjct 277661 ATGT 277664 >seq2 Length=188096 Score = 107 bits (118), Expect = 3e-18 Identities = 156/218 (72%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 42056 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAA 42115 |||| || || ||||| ||| |||||||||||| || | | || | |||||||| Sbjct 160252 AACAGCAGGCAAGCGAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAG 160193 Query 42116 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCA 42175 || ||||| || ||||| || |||||||| || ||||| || || || || || || || Sbjct 160192 AAGGTGAGACCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCGAAGGAGCCG 160133 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCT-CTCCATAACCG--GCA 42232 || |||||||| || || || || || || |||| || | || | | || | Sbjct 160132 GAGAAGAAGATACCCTCAACGGCAGCGAAAGCAACGAGACGCTGAGCGAAGGTCGACTCC 160073 Query 42233 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 42270 ||||| || |||||||| ||||||||||||||||| Sbjct 160072 CTGTCCTGGATCCACTTAATGGCCCAATCGGCCTTCTT 160035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671136523832440