Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aspergillus_20niger_20[genbank_20GCA_5F001741885.1_202016-09-21] 319 sequences; 34,635,689 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq74 192 6e-44 seq196 89.7 6e-13 >seq74 Length=773240 Score = 192 bits (212), Expect = 6e-44 Identities = 397/588 (68%), Gaps = 2/588 (0%) Strand=Plus/Minus Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACGAC 53254 ||||| || ||| | |||||||||||| ||| | | | | ||||| ||| || Sbjct 277360 ATGCGTGTTGCCGTTGGTATCCACGGTAGTGACATCGAGAAGGCCATCGAGACCTACCAC 277301 Query 53255 TTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAAT 53314 || ||| ||| |||||||| || |||||| | || || ||||||||||||||||| Sbjct 277300 TTGATGTCCCAGAAGTACTTCACTCACGCCTCCCCGACTCTGTTCAACGCTGGTACTCCC 277241 Query 53315 CACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATC 53374 || |||||| | | |||||||| || | |||||||| ||| || ||||| ||| Sbjct 277240 CAGCCTCAGCTTGCCTCTTGCTTCCTCGTCGACATGAAGGAGGACAGCATTGACGGTATC 277181 Query 53375 TACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC 53434 ||||| || | ||| || || ||||||||| | |||||||| ||| | || Sbjct 277180 TACGACACTTTGAAGACTTGCGCTATGATCTCCAAGACCGCCGGTGGTATTGGTCTGAAC 277121 Query 53435 -TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGG 53493 ||| | | |||| | | ||| | || || || ||||| | || | || Sbjct 277120 GTGCACCG-CATCCGCTCTACCGGATCTTACATTGGTGGCACCAACGGTACCTCCAACGG 277062 Query 53494 AATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGG 53553 | || || ||||| || || ||||||||||| ||| | ||||| |||||||||| Sbjct 277061 TCTTGTTCCCATGCTTCGGGTTTTCAACAACACTGCCAGATACGTTGACCAGGGTGGCAA 277002 Query 53554 GAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTT 53613 ||||| || | || ||||||||||| ||||| |||||| | || | | ||||| Sbjct 277001 CAAGCGTCCCGGTGCTTTTGCCATCTACCTTGAGCCCTGGCACTCGGATGTCTTCGAGTT 276942 Query 53614 TCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGC 53673 || || || ||| ||| || ||| | || ||| | | ||| || ||||| || Sbjct 276941 CCTGGACCTCCGTAAGAACCACGGTAAGGAGGAGGTCAGAGCCCGCGATCTGTTCTATGC 276882 Query 53674 TCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGAT 53733 ||||||| |||||| || |||||| | || ||| | ||| || ||| ||| | Sbjct 276881 CCTGTGGACTCCGGATCTGTTCATGAAGCGTGTTGAGGCGAACGGCGACTGGACTCTGTT 276822 Query 53734 GTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTT 53781 ||||| ||||| ||| ||| | | |||||||||||| ||||| Sbjct 276821 CTGCCCCAACGAAGCCCCTGGCTTGGCTGATGTCTACGGTGACGAGTT 276774 Score = 132 bits (146), Expect = 5e-26 Identities = 300/445 (67%), Gaps = 7/445 (2%) Strand=Plus/Minus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||| | |||| || || || ||||| || || || ||||||| ||||| | Sbjct 276042 CGCAACAGCTTGCTGGTCGCCCCCATGCCCACTGCCAGTACCAGTCAGATCTTGGGCTTC 275983 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 |||||| |||||||| ||||| ||||||||||| ||||| | | || |||||| Sbjct 275982 AACGAGTGCTTCGAGCCTTACACCTCCAACATCTACTCCCGCCGTGTCTTGGCTGGTGAG 275923 Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCG 55663 || || ||||| || | ||||||||| | || | |||| Sbjct 275922 TTCCAGGTGGTCAACCCCTGGCTGCTGAAGGACCTGGTCGATCTCGGCCTGTGGTCGGAC 275863 Query 55664 CAGATCAAGA--CGGATATTGTGCGGAACGGGGGGTCCGTCCAGAA--TCTGGAGATTCC 55719 | || |||| || || | ||| || || || ||||||||||| || | ||| Sbjct 275862 AACATGAAGAACCGCATCAT-TGCCGAG-GGTGGTTCCGTCCAGAACATCCCCAACATCC 275805 Query 55720 TCTGCGTC-TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTG 55778 | | | | |||||| | | ||| ||||||||||||||| | ||| || | | Sbjct 275804 CCAGTGACATCAAGGCGCTGTACAAGACGGTGTGGGAGATCTCCCAGCGGACGATCCTGC 275745 Query 55779 ACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGG 55838 | ||| || || |||||||||| ||| |||||||| ||||| || |||||| | || Sbjct 275744 AGATGGCAGCGGACCGTGGTGCGTTCATTGACCAGTCTCAGTCCCTCAACATCCACCTGA 275685 Query 55839 AGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCA 55898 || | || | ||| |||| | | | ||||||||| ||| ||||||| ||| || | Sbjct 275684 AGGAGCCCACCATGGGCAAGATCACCAGCATGCACTTTGCCGGCTGGAAGATGGGTCTGA 275625 Query 55899 AGACGGGTATGTACTATCTGCGGAC 55923 |||||||||||||||| ||||| || Sbjct 275624 AGACGGGTATGTACTACCTGCGCAC 275600 >seq196 Length=438949 Score = 89.7 bits (98), Expect = 6e-13 Identities = 195/288 (68%), Gaps = 8/288 (3%) Strand=Plus/Minus Query 118013 AGCCCCTTGATATGGGAACCGTCCAGATCCGCATCGGTCATGATCATCAGGCGGCCGTAC 118072 || |||||||| || |||||| ||||| ||| ||||||||||||| | | |||||| Sbjct 133763 AGGCCCTTGATGTGACTACCGTCGTGATCCTGATCAGTCATGATCATCAAGTGACCGTAC 133704 Query 118073 CGTAAATCTCTCAGGGAGT---TATAAACCTTACCATGTTGGAGCCCGAGGATCTTTTTA 118129 || | | | ||| || |||| |||| || || || || | || || || Sbjct 133703 CGAAGGCCGC---GGGTGTCGGTATACTCCTTCTTGTGCTGCAGACCCAAGAAGTTCTTG 133647 Query 118130 AGGTTGGAAAATTCCTCATTTTCCGTCACCTGTTTTATGGTGGCGTCCCGAACGTTGCGC 118189 | || || ||||| ||||| | | ||| | | || ||||| || |||||| || Sbjct 133646 ATATTCTGAATTTCCTGATTTTTTGAGATCTGGTCGAAGGAAGCGTCACGGACGTTGAGC 133587 Query 118190 GGCTTACCCCGCAGTGGAAACACGCCAAACTTGTCACGGCCCACAA-CGCTCAAGCCGGC 118248 | ||||| || || || || |||||||| || |||| |||| ||||| | || || Sbjct 133586 AGTTTACCTCGAAGCGGGAAAACGCCAAAAAGATCCGGGCCAACAACCGCTCGA-CCAGC 133528 Query 118249 AATAGCAAGGGCCTTCGCCGAGTCACCCTCGGTAATAATAAGAGTGCA 118296 || || || |||| || |||||||| || || | || || ||||| Sbjct 133527 CATGGCCAGACCCTTGGCAGAGTCACCTTCTGTGAGGATCAGGGTGCA 133480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547213817976200