Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aspergillus_20niger_20[genbank_20GCA_5F001741905.1_202016-09-21] 30 sequences; 35,983,474 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1 140 5e-28 seq19 131 2e-25 >seq1 Length=4441427 Score = 140 bits (154), Expect = 5e-28 Identities = 473/728 (65%), Gaps = 18/728 (2%) Strand=Plus/Minus Query 79861 TCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGAC 79920 ||||||||||| || | ||||| | || ||||| ||||| || || | || | | Sbjct 2371067 TCGAACTCGTCACCGTAGACATCAGCCAAGCCAGGGGCTTCGTTGGGGCAGAACAGAGTC 2371008 Query 79921 CACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 79979 || || || | ||| || || ||||| || ||||| ||| |||| || || ||| || Sbjct 2371007 CAGTCGCCGTTCGCCTCAACACGCTTCATGAACAGATCCGGAGTCCACAGGGC-ATAGAA 2370949 Query 79980 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 80039 ||||| | || ||| |||||| || || ||||| || || |||||| | | Sbjct 2370948 CAGATCGCGGGCTCTGACCTCCTCCTTACCGTGGTTCTTACGGAGGTCCAGGAACTCGAA 2370889 Query 80040 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCC 80099 | ||| || ||||| || || | ||| ||||| | | | || || || ||||| || || Sbjct 2370888 GACATCCGAGTGCCAGGGCTCAAGGTAGATGGCAAAAGCACCGGGACGCTTGTTGCCACC 2370829 Query 80100 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 80159 ||| || | |||||| || ||||| || |||| | | ||| |||| || ||| ||||| Sbjct 2370828 CTGGTCAACGTATCTGGCAGTGTTGTTGAAAACCCGAAGCATGGGAACAAGACCGTTGGA 2370769 Query 80160 TGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGA 80217 ||||| ||||| || || || ||| | | || || | | || ||| Sbjct 2370768 GGTACCGTTGGTGCCACCAATGTAAGATCCGGTAGAGCGGATGCGGTGCACGTT--CAGA 2370711 Query 80218 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 80277 || || || || || | || ||||| | ||||| || || || || ||||| || Sbjct 2370710 CCAATACCACCGGCGGTCTTGGAGATCATAGCGCAAGTCTTCAAAGTGTCGTAGATACCG 2370651 Query 80278 TCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT---- 80333 || ||||| || || |||||| | || | ||| ||| | ||| | || Sbjct 2370650 TCAATGCTGTCCTCCTTCATGTCGACGAGGA---AGCAAGAGGCAAGCTGA-GGCTGGGG 2370595 Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 ||| || || || || | || || || ||||| || || | || | |||| | | Sbjct 2370594 AGTACCAGCGTTGAACAGAGTCGGGGAGGCGTGAGTGAAGTACTTCTGGGACATCAAGTG 2370535 Query 80394 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAA 80453 ||| ||||| || || || || || | || || || || || |||||||| | Sbjct 2370534 GTAGGTCTCGATGGCCTTCTCGATGTCACTACCGTGGATACCAACGGCAACACGCATCAG 2370475 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 || |||||| || | ||| | | ||| || || ||||| ||| || |||| Sbjct 2370474 CAGGTGCTGGGGACGCTCAGCCACCTTTCCGTTGATCCGCAACAGGTATGACCGCTCCAG 2370415 Query 80514 AGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTG 80571 || || || || || ||||||| ||||| || || ||||| | |||| ||||||| Sbjct 2370414 GGTCTTGAAGCCGAAGAAGTTGTAGTTGAAA--TCACGGTCGTATACAATAGCCGAGTTA 2370357 Query 80572 AGTTTATC 80579 || | ||| Sbjct 2370356 AGCTCATC 2370349 >seq19 Length=3504736 Score = 131 bits (144), Expect = 2e-25 Identities = 160/218 (73%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 49951 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 50010 |||| || || ||||| ||| ||||||||||||||| | | || || |||||||| Sbjct 126086 AACAGCAGGCAAGCGAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAG 126145 Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCA 50070 || ||||| || ||||| || |||||||| || ||||| || ||||| || || || || Sbjct 126146 AAGGTGAGACCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCGAAGGAGCCG 126205 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CG 50127 || |||||||| || || || || || || ||||| || | || | | | | | Sbjct 126206 GAGAAGAAGATACCCTCAACGGCAGCGAAAGCAACGAGACGCTGAGCGAAGGTCGACTCC 126265 Query 50128 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 50165 ||||| || |||||||| ||||||||||||||||| Sbjct 126266 CTGTCCTGGATCCACTTAATGGCCCAATCGGCCTTCTT 126303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268530649200