Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aspergillus_20niger_20[genbank_20GCA_5F001741905.1_202016-09-21] 30 sequences; 35,983,474 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1 134 3e-26 seq11 107 5e-18 >seq1 Length=4441427 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| || || |||| ||| |||||| ||||| || ||||||| Sbjct 1018634 CCACCACGGAGACGAAGGACAAGGTGAAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAC 1018575 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || || || || || || || || |||||||||| |||||| || ||| Sbjct 1018574 AAGGTACGGCCATCCTCCAACTGCTTACCAGCGAAGATCAAACGCTGCTGGTCCGGGGGG 1018515 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || || || || || | || ||||| || || | ||| ||||| ||| Sbjct 1018514 ATGCCTTCCTTGTCTTGAATCTTGGTCTTAACGTTATCAATTGTGTCGGAAGATTCAACT 1018455 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||||||||| || || |||||||||||||| |||||||| Sbjct 1018454 TCCAATGTGATCGTCTTTCCCGTGAGAGTCTTGACGAAGATCTGCAT 1018408 Score = 111 bits (122), Expect = 4e-19 Identities = 159/223 (71%), Gaps = 6/223 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| ||||| |||| ||| ||| ||||| || || ||||| | Sbjct 1018406 CCACCACGCAGACGAAGGACGAGGTGAAGGGTGGATTCCTTTTGAATGTTGTAGTCAGAC 1018347 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | || ||||| ||||||||||||||||| || || ||| Sbjct 1018346 AGGGTACGGCCATCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTG---GTCCGGG 1018290 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || ||||| || || | ||||| || || || | || || || Sbjct 1018289 GGAATGCCCTCCTTGTCCTGAATCTTGGTCTTCACATTGTCGATGGTGTCAGAAGACTCC 1018230 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATA 288466 || || || ||||| ||||| |||||||| |||||||||| || Sbjct 1018229 ACCTCAAGGGTGATGGTCTTTCCGGTCAGGGTCTTGACGACTA 1018187 Score = 109 bits (120), Expect = 1e-18 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || ||||| | || || || ||||| || ||||| Sbjct 1018105 CCACCACGCAGGCGGAGGACAAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCACTA 1018046 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| || || || | || ||||| ||||||||||||||||| || ||| Sbjct 1018045 AGCGTGCGGCCATCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCGGGAGGG 1017986 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || ||||||||||| || | || ||||| || || | |||||| || || || Sbjct 1017985 ATGCCCTCCTTATCCTGGATCTTGGTCTTGACGTTGTCGATGGTATCGCTGGACTCGACC 1017926 Query 288427 TCGAGCGTGATCGTCTTCCCGGT 288449 ||||| ||||| ||||| ||||| Sbjct 1017925 TCGAGGGTGATGGTCTTGCCGGT 1017903 >seq11 Length=4837238 Score = 107 bits (118), Expect = 5e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || |||||| || ||||| || || || | || || || |||||||| Sbjct 2951679 TTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAGATA 2951620 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 |||||||| ||| ||||| || || || |||||||| || | || ||||| || Sbjct 2951619 AGACGCTGCTGATCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCG 2951560 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464 || | |||||||| || || ||||| || || ||||| || || || ||||||||||| Sbjct 2951559 ATGGTGTCGCTCGACTCGACGTCGAGGGTAATGGTCTTACCCGTGAGGGTCTTGACGAA 2951501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179653946570340