Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aspergillus_20niger_20[genbank_20GCA_5F001741905.1_202016-09-21] 30 sequences; 35,983,474 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq1 107 2e-18 seq11 96.9 4e-15 seq3 86.0 7e-12 >seq1 Length=4441427 Score = 107 bits (118), Expect = 2e-18 Identities = 158/220 (72%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | ||||| |||| ||||||||||| || || |||||||| | || || || | Sbjct 1018851 ACGGAGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAATCGGAGAGCGTACGTCC 1018792 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || | ||||||||||||||| ||||| ||||||||||| | || | || |||||| Sbjct 1018791 ATCTTCCAACTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTT 1018732 Query 42113 GTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCG 42168 | | ||| | || || |||| | | | || || |||| ||||| || | || Sbjct 1018731 AT-CTTGAATCTTAGTCTTGACGTTATCAATGGTATCCGAGCTC---TCCACCTCCAGCG 1018676 Query 42169 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || || ||||| || || ||||| || ||||| ||||| Sbjct 1018675 TAATCGTCTTGCCGGTAAGAGTCTTCACGAAGATCTGCAT 1018636 Score = 96.9 bits (106), Expect = 4e-15 Identities = 131/180 (73%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||||||||| ||||| |||| ||| || || | || || |||||||| |||||||| Sbjct 1018370 TCCTTTTGAATGTTGTAGTCAGACAGGGTACGGCCATCCTCCAGCTGCTTTCCAGCGAAG 1018311 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGT 42136 || || ||||||||||| | || | || |||||||||| ||| | || || || | | Sbjct 1018310 ATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC-TGAATCTTGGTCTTCACATT 1018252 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | ||||| || ||||| || | |||||||| || || || || ||||| || Sbjct 1018251 GTCGATGGTGTCAGAAGACTCCACCTCAAGGGTGATGGTCTTTCCGGTCAGGGTCTTGAC 1018192 Score = 86.0 bits (94), Expect = 7e-12 Identities = 122/169 (72%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| ||| || || || | || || |||||||| || ||||| Sbjct 1018070 CTCCTTCTGGATGTTGTAGTCACTAAGCGTGCGGCCATCCTCCAGCTGCTTTCCGGCGAA 1018011 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||||| || | || |||||| ||| ||| || |||| ||| Sbjct 1018010 GATCAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTATCCTGGATCTTGGTCTTGA-CGT 1017952 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 42184 | | | || ||||| || || || |||| |||||||| ||||| || Sbjct 1017951 TGTCGATGGTATCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 1017903 Score = 82.4 bits (90), Expect = 8e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 || || || || ||||| || | || || || | || || | ||||||||||||||| Sbjct 1018598 TCTTTCTGGATGTTGTAGTCGGACAAGGTACGGCCATCCTCCAACTGCTTACCAGCGAAG 1018539 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCG-T 42136 || | ||||||||||| | || | || ||||||| | ||| | || || | | || | Sbjct 1018538 ATCAAACGCTGCTGGTCCGGGGGGATGCCTTCCTTGT-CTTGAATCTTGGTCTTAACGTT 1018480 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | |||||| ||||| || || | ||||| || || ||||| || ||||| || Sbjct 1018479 ATCAATTGTGTCGGAAGATTCAACTTCCAATGTGATCGTCTTTCCCGTGAGAGTCTTGAC 1018420 Query 42197 AAAGATTTGCAT 42208 ||||| ||||| Sbjct 1018419 GAAGATCTGCAT 1018408 >seq11 Length=4837238 Score = 96.9 bits (106), Expect = 4e-15 Identities = 132/182 (73%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078 |||| || || ||||| || ||| || || | || || ||||||||||||||||| | Sbjct 2951681 CCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAGA 2951622 Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138 | || |||||||| || | || | | |||||||||| ||| || |||| ||| | Sbjct 2951621 TAAGACGCTGCTGATCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGTCTTGA-CGTTG 2951563 Query 42139 CC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | ||||||||||| || || |||| || ||||| || ||||| || ||||| || Sbjct 2951562 TCGATGGTGTCGCTCGACTCGACGTCGAGGGTAATGGTCTTACCCGTGAGGGTCTTGACG 2951503 Query 42198 AA 42199 || Sbjct 2951502 AA 2951501 >seq3 Length=6264253 Score = 86.0 bits (94), Expect = 7e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 |||||| || | ||| |||||| || || ||||| || | ||||| || |||| || Sbjct 4513886 CACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTACGGCCGTCCTC 4513945 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTC 42115 ||||||||||||||||| || || ||||||||||| | || | | ||||||||| Sbjct 4513946 GAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTC 4514002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543212596295200