Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aspergillus_20niger_20[genbank_20GCA_5F001741905.1_202016-09-21] 30 sequences; 35,983,474 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq19 102 8e-17 seq3 91.5 1e-13 >seq19 Length=3504736 Score = 102 bits (112), Expect = 8e-17 Identities = 159/225 (71%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 47046 GAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGC 47105 ||||| || |||| || ||||||| | |||| || |||||||| || |||||||| Sbjct 126033 GAGGCCGTCGGCATTGAGCAGGAGTTCCTGACTGACGCTCTGCCCGTTGCTCTGCTGGGC 125974 Query 47106 ATGAACGCACAGTCTATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAG 47165 |||||| | || ||||| | || || |||||||| ||||| || ||| ||||| Sbjct 125973 ATGAACTCCAAGCTGATGTGTCAGTACATCGAGTTTGTCGCGGACCGCCTGCTGGTGGCC 125914 Query 47166 CTCGGACAAC-CGAAATATTTTAATGCTCGTAATCCGTTTGAGTTTATGAACAACATTTC 47224 ||||| |||| ||| || | || || || || || || || ||| | || || Sbjct 125913 CTCGG-CAACAAGAAGTACTACAACGCCACCAACCCCTTCGACTTCATGGAGTCGATCTC 125855 Query 47225 GCTCGAGGGCAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGTA 47269 ||| | ||| || ||||| || |||||||| || || ||||| || Sbjct 125854 GCTGGCGGGTAAGACCAACTTCTTCGAGAAGCGGGTAGGAGACTA 125810 >seq3 Length=6264253 Score = 91.5 bits (100), Expect = 1e-13 Identities = 99/129 (77%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 51741 TTGCCCAAGTCGCCGACGTGGCGCATCGCCGCGTTCGG-AGCGCCGTGGTCGCTGCCGGT 51799 ||||| | ||| |||||||| ||| ||| || |||| ||| |||||| ||||| Sbjct 851829 TTGCCAAGGTCACCGACGTGACGC-TCGTCGTCCTCGGGAGCACCGTGGGTCTTGCCGAA 851887 Query 51800 GGGGTTGAAGTGTTCGCCCGCCGACGTGCAGCCGTTGCTGGTGTCGCCGAATTCGTGCAC 51859 |||||||||||| ||| || || |||||||||||| || |||| ||||| | ||| || Sbjct 851888 GGGGTTGAAGTGAGGGCCAGCGGAGGTGCAGCCGTTGGTGTTGTCACCGAACTGGTGGAC 851947 Query 51860 GTGGAATCC 51868 |||||| || Sbjct 851948 GTGGAAGCC 851956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476611021270800