Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aspergillus_20niger_20[genbank_20GCA_5F001741905.1_202016-09-21] 30 sequences; 35,983,474 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq19 179 5e-39 seq1 109 8e-18 seq11 87.8 3e-11 >seq19 Length=3504736 Score = 179 bits (198), Expect = 5e-39 Identities = 222/299 (74%), Gaps = 5/299 (2%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || ||||||||||| || || |||||||||||||| |||| | Sbjct 126705 GATCTGGCAGATGTAC-AAGAAGGCCGAGGCTTCTTTCTGGACCGCCGAGGAAATCGATC 126647 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTCATCA 1455891 | | || | | ||||| ||| ||| ||||||||||||| | |||||| Sbjct 126646 TGTCCAAGGATTTGCACGACTGGCACAACCGCCTGAACGACGACGAGCGCTACTTCATCT 126587 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 ||||| ||||| || || ||| ||| ||||||||| || ||||||||| | || Sbjct 126586 CCCACGTTCTCGCGTTCTT-CGCTGCCTCCGATGGCATTGTCAACGAGAACCTTGTCGAG 126528 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 ||||| | |||||||| | || ||||| |||| || ||||| ||||||||| Sbjct 126527 CGCTTCAGCGGCGAGGTCCAGGTTCCTGAGGCTCGTTGCTTCTACGGATTCCAGATCATG 126468 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCC 1456070 || || ||||||||||| || |||||||| ||||||||||| |||||| ||||||| || Sbjct 126467 ATGGAGAACATCCACTCCGAGACCTACTCTCTCCTGATCGATACCTACATCAAGGAGCC 126409 Score = 147 bits (162), Expect = 3e-29 Identities = 191/259 (74%), Gaps = 4/259 (2%) Strand=Plus/Minus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 || |||||||||||||||| || ||| | ||||| | | || | ||||| || || Sbjct 126042 ATTATCGTCGAGGCCGTCGGCATTGAGCAGGAGTTCCTGACTGACGCTCTGCCCGTTGCT 125983 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 || | ||||||||| ||| ||| ||||| |||||||| || ||| ||||| ||||||| Sbjct 125982 CTGCTGGGCATGAACTCCAA-GCTGATGTGTCAGTACATCGAGTTT-GTCGCGGACCGCC 125925 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 |||| | ||| |||||| | ||||| ||||| | ||||||| ||| | ||| Sbjct 125924 TGCTGGTGGCCCTCGGCAACA-AGAAGTACTACAACGCCACCAACCCCTTCGACTTCATG 125866 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACGCC 1456761 |||| ||||||||| | ||| ||||||||||| |||||| || || || || ||| Sbjct 125865 GAGTCGATCTCGCTGGCGGGTAAGACCAACTTCTTCGAGAAGCGGGTAGGAGACTACCAG 125806 Query 1456762 AAGGCCGGCGTCACCGCCA 1456780 ||||| || |||| |||| Sbjct 125805 AAGGCTGGTGTCATGGCCA 125787 Score = 104 bits (114), Expect = 3e-16 Identities = 139/188 (74%), Gaps = 4/188 (2%) Strand=Plus/Minus Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGC 1456182 || |||||||| ||||| || ||||||||| | | |||| ||||| ||| || ||| Sbjct 126303 AAGAAGGCCGATTGGGCCATTAAGTGGATCCAGGAC-AGGGAGTCGAC-CTTCGCTCAGC 126246 Query 1456183 GGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCT 1456241 | ||||| | || || || || ||||| ||||| ||||| ||| ||| |||||| Sbjct 126245 GTCTCGTTGCTTTCGCTGCCGTTGAGGGTATCTTCTTCTCCGGCTCCTTCGCTTCCATCT 126186 Query 1456242 TTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGT 1456301 | |||||||||||||| || |||||||| |||| || ||| |||||| | ||| | Sbjct 126185 TCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTC-TCACCTTCTCCAACGAGCTCATCTCT 126127 Query 1456302 CGCGACGA 1456309 || ||||| Sbjct 126126 CGTGACGA 126119 >seq1 Length=4441427 Score = 109 bits (120), Expect = 8e-18 Identities = 199/289 (69%), Gaps = 2/289 (1%) Strand=Plus/Plus Query 259895 ATGTCGCAGCAGTTGTTCACCTCA-GCGACGCCCACGCTCTTTAATGCCGGCACGCCGCG 259953 ||||| ||| ||| ||||| ||| || | || || || || || || || || || | Sbjct 2370541 ATGTCCCAGAAGTACTTCAC-TCACGCCTCCCCGACTCTGTTCAACGCTGGTACTCCCCA 2370599 Query 259954 CCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTA 260013 || ||| | | || ||||| || | |||||||||| || || || || ||||| Sbjct 2370600 GCCTCAGCTTGCCTCTTGCTTCCTCGTCGACATGAAGGAGGACAGCATTGACGGTATCTA 2370659 Query 260014 TGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGC 260073 ||||| | ||| ||||| | ||||||||| | ||||| || || ||| | || Sbjct 2370660 CGACACTTTGAAGACTTGCGCTATGATCTCCAAGACCGCCGGTGGTATTGGTCTGAACGT 2370719 Query 260074 ACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCT 260133 ||| | ||| | | || | ||| | | ||||||||||| |||||||| || Sbjct 2370720 GCACCGCATCCGCTCTACCGGATCTTACATTGGTGGCACCAACGGTACCTCCAACGGTCT 2370779 Query 260134 TGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 ||| ||||||||||| ||||| ||| |||| || | ||||| |||||| Sbjct 2370780 TGTTCCCATGCTTCGGGTTTTCAACAACACTGCCAGATACGTTGACCAG 2370828 >seq11 Length=4837238 Score = 87.8 bits (96), Expect = 3e-11 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 165768 GGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGCGAGATGGCGTCGGCGCTG 165827 |||||||| ||||| |||||||||||| |||||| ||||| ||| |||| |||| ||| Sbjct 2163960 GGCGCCGTTGGTGCTCGCACCACCGAGTCCCAGGTCCACCGTGAGTTGGCCTCGGGTCTG 2164019 Query 165828 CCGCTGCCCATTGGCTTCAAAAACAGCACCGACGGC 165863 | | ||| |||| ||||| ||| | ||||||||| Sbjct 2164020 TCCTTCCCCGTTGGTTTCAAGAACGGTACCGACGGC 2164055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177808306444860