Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aspergillus_20niger_20[genbank_20GCA_5F001741905.1_202016-09-21] 30 sequences; 35,983,474 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1 159 4e-34 seq3 100 4e-16 seq19 98.7 1e-15 >seq1 Length=4441427 Score = 159 bits (176), Expect = 4e-34 Identities = 584/913 (64%), Gaps = 66/913 (7%) Strand=Plus/Minus Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 111289 |||||||| | || || | ||||| ||||| ||||||| | | ||||||| | Sbjct 2371368 GGAAGGGCAAGAGAGGCAAGGTTGCAGACAGCAACCTCATCCGGAGCACTGTACTCAATG 2371309 Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349 || || || || | |||||| || || || || | ||||| ||||| ||||||||| Sbjct 2371308 ATCTCAGTGCAGAGGTTGGAGCTACGGATGGTTCCGAGGTTCTTCTGGTTGCTCTTCTTG 2371249 Query 111350 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATA 111409 ||||| ||||||||||| |||||| |||| | || ||||| ||||| | | |||||| Sbjct 2371248 TTGCAAGCATCCTTGTACAGCATGAAGGGGTTACCAGTCTCGGTCTGAGCCTCCAGAATA 2371189 Query 111410 GCCTTCCA-AACATCGGCG----GCTGGTACAATGGCGTTGGCC--------CGTCCCTC 111456 || | ||| | | || | | | |||||| | ||| |||| ||| ||| Sbjct 2371188 GCGTACCAGAGCTTCTGAGCCTTGATGGTACGACGGCCACGGCCTTCCTTCTCGTACCTA 2371129 Query 111457 C----------GCCT--------------------------CGTACTTTGTGTAGAGGGC 111480 | || | | ||||| ||||||||| Sbjct 2371128 CAATACTATTAGCATGAGTTGAGAATACACGAACCAACAAACTTACTTCTCGTAGAGGGC 2371069 Query 111481 TTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGA 111540 || ||||| ||||| | || | | || || || | || || ||||| |||| Sbjct 2371068 GTCGAACTCGTCACCGTAGACATCAGCCAAGCCAGGGGCTTCGTTGGGGCAGAACAGAGT 2371009 Query 111541 CCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAA 111600 ||| | || ||||||| ||||||||||| || || ||| ||||||||| | || Sbjct 2371008 CCAGTCGCCGTTCGCCTCAACACGCTTCATGAACAGATCCGGAGTCCACAGGGCATAGAA 2370949 Query 111601 GAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCA 111659 ||||| | | | || |||| || | ||| ||||| || | || |||||||| | Sbjct 2370948 CAGATCGCGGGCTCTGA-CCTCCTCCTTACCGTGGTTCTTACGGAGGTCCAGGAACTCGA 2370890 Query 111660 TGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------C 111713 || ||||| |||||| |||||||| |||| || | || || ||||| | Sbjct 2370889 AGACATCCGAGTGCCAGGGCTCAAGGTAGATGGCAAAAGCACC---GGGACGCTTGTTGC 2370833 Query 111714 CAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCAT 111773 || | || | || || | || ||| ||| || || |||||||| |||| || ||| | Sbjct 2370832 CACCCTGGTCAACGTATCTGGCAGTGTTGTTGAAAACCCGAAGCATGGGAACAAGACCGT 2370773 Query 111774 CTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCA 111833 || ||| || || || | ||| |||| | | | | || | || || Sbjct 2370772 TGGAGGTACCGTTGGTGCCACCAATGTAAGATCCGGTAGAGCGGATGCGGTGCACGTTCA 2370713 Query 111834 TCCCAATACCCCCAGCCCACTTTGAGAT--TTGCGCACACTCCGTAAGAGTTCCATAGAT 111891 |||||||| || || ||| ||||| | ||||| | | | | | ||| | ||||| Sbjct 2370712 GACCAATACCACCGGCGGTCTTGGAGATCATAGCGCA-AGT-CTTCAAAGTGTCGTAGAT 2370655 Query 111892 ACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGG 111951 ||||| || ||||||||| || ||| ||||||||| || | ||| || || Sbjct 2370654 ACCGTCAATGCTGTCCTCCTTCATGTCGACGAGGAAGCAAGAGGCAAGCTGAGGCTGGGG 2370595 Query 111952 TGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGT 112010 |||||||| ||||| || || || | |||||| |||| ||| | ||||||||| || Sbjct 2370594 AGTACCAGCGTTGAACAGAGTCGGGGAGGCGTGAGTGAA-GTACTTCTGGGACATCAAGT 2370536 Query 112011 CGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGA 112070 ||| ||||| | | | || ||||| |||||||| || | || || ||||| | Sbjct 2370535 GGTAGGTCTCGATGGCCTTCTCGATGTCACTACCGTGGATACCAACGGCAACACGCATCA 2370476 Query 112071 ACATGTACTGTGG 112083 || || ||| || Sbjct 2370475 GCAGGTGCTGGGG 2370463 >seq3 Length=6264253 Score = 100 bits (110), Expect = 4e-16 Identities = 161/227 (71%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 11630 GCATCAATCTCATCAATGAAGACAATACATGG--TTGATTTTCGCGGGCGATTTCAAAGA 11687 |||||||| ||||| ||||||| ||| || || | ||||| |||| || | | || | Sbjct 1554854 GCATCAATTTCATCGATGAAGATAATGCAGGGCGTCGATTTCCGCG--CGTTGGCGAACA 1554911 Query 11688 GATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAG- 11746 |||| ||||| | | ||| ||||| ||||||||||| ||||| | | || | Sbjct 1554912 GATCACGAACTCGGGAAGGACCGACACCGACAAACATCTCGACAAACTCCGAACCACTGA 1554971 Query 11747 CACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCC 11806 |||| || ||| || || |||||||| || |||| ||| || | ||||| || Sbjct 1554972 CACT-GAAGAAGGGCACGCCGGATTCACCAGCCGTGGCCTTGGCAAGTAACGTCTTACCG 1555030 Query 11807 GTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC 11853 ||||| || ||||| |||| ||| || |||||||| |||||||| Sbjct 1555031 GTACCCGGAGGACCCGAAAGAATGGCACCACGGGGGATTTTGGCACC 1555077 >seq19 Length=3504736 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| |||||||| || || || || || || || |||||| ||||| ||||||||||| Sbjct 126109 GTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTGAGACCAGGCATGAGACC 126168 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| | || | ||| || |||||||||||||||||||| || Sbjct 126169 ACGCTTCTTGAGCCAGAAGATGGAAGCGAAGGAGCCGGAGAAGAAGATACCCTCAACGGC 126228 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTG-CATCAAACCATTTCATTG 122848 || || |||| || || | ||||||| ||| | || | | | ||| || || | Sbjct 126229 AGCGAAAGCAACGAGACGCTGAGCGAAGG-TCGACTCCCTGTCCTGGATCCACTTAATGG 126287 Query 122849 CCCATTTCGCCTTCTTCTCAATACATGGTAC 122879 |||| | |||||||| |||| || || || Sbjct 126288 CCCAATCGGCCTTCTTGGCAATGCAGGGGAC 126318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031764488000