Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aspergillus_20niger_20[genbank_20GCA_5F001741905.1_202016-09-21] 30 sequences; 35,983,474 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1 192 6e-44 seq4 89.7 6e-13 >seq1 Length=4441427 Score = 192 bits (212), Expect = 6e-44 Identities = 397/588 (68%), Gaps = 2/588 (0%) Strand=Plus/Plus Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACGAC 53254 ||||| || ||| | |||||||||||| ||| | | | | ||||| ||| || Sbjct 2370478 ATGCGTGTTGCCGTTGGTATCCACGGTAGTGACATCGAGAAGGCCATCGAGACCTACCAC 2370537 Query 53255 TTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAAT 53314 || ||| ||| |||||||| || |||||| | || || ||||||||||||||||| Sbjct 2370538 TTGATGTCCCAGAAGTACTTCACTCACGCCTCCCCGACTCTGTTCAACGCTGGTACTCCC 2370597 Query 53315 CACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATC 53374 || |||||| | | |||||||| || | |||||||| ||| || ||||| ||| Sbjct 2370598 CAGCCTCAGCTTGCCTCTTGCTTCCTCGTCGACATGAAGGAGGACAGCATTGACGGTATC 2370657 Query 53375 TACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC 53434 ||||| || | ||| || || ||||||||| | |||||||| ||| | || Sbjct 2370658 TACGACACTTTGAAGACTTGCGCTATGATCTCCAAGACCGCCGGTGGTATTGGTCTGAAC 2370717 Query 53435 -TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGG 53493 ||| | | |||| | | ||| | || || || ||||| | || | || Sbjct 2370718 GTGCACCG-CATCCGCTCTACCGGATCTTACATTGGTGGCACCAACGGTACCTCCAACGG 2370776 Query 53494 AATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGG 53553 | || || ||||| || || ||||||||||| ||| | ||||| |||||||||| Sbjct 2370777 TCTTGTTCCCATGCTTCGGGTTTTCAACAACACTGCCAGATACGTTGACCAGGGTGGCAA 2370836 Query 53554 GAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTT 53613 ||||| || | || ||||||||||| ||||| |||||| | || | | ||||| Sbjct 2370837 CAAGCGTCCCGGTGCTTTTGCCATCTACCTTGAGCCCTGGCACTCGGATGTCTTCGAGTT 2370896 Query 53614 TCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGC 53673 || || || ||| ||| || ||| | || ||| | | ||| || ||||| || Sbjct 2370897 CCTGGACCTCCGTAAGAACCACGGTAAGGAGGAGGTCAGAGCCCGCGATCTGTTCTATGC 2370956 Query 53674 TCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGAT 53733 ||||||| |||||| || |||||| | || ||| | ||| || ||| ||| | Sbjct 2370957 CCTGTGGACTCCGGATCTGTTCATGAAGCGTGTTGAGGCGAACGGCGACTGGACTCTGTT 2371016 Query 53734 GTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTT 53781 ||||| ||||| ||| ||| | | |||||||||||| ||||| Sbjct 2371017 CTGCCCCAACGAAGCCCCTGGCTTGGCTGATGTCTACGGTGACGAGTT 2371064 Score = 132 bits (146), Expect = 5e-26 Identities = 300/445 (67%), Gaps = 7/445 (2%) Strand=Plus/Plus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||| | |||| || || || ||||| || || || ||||||| ||||| | Sbjct 2371796 CGCAACAGCTTGCTGGTCGCCCCCATGCCCACTGCCAGTACCAGTCAGATCTTGGGCTTC 2371855 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 |||||| |||||||| ||||| ||||||||||| ||||| | | || |||||| Sbjct 2371856 AACGAGTGCTTCGAGCCTTACACCTCCAACATCTACTCCCGCCGTGTCTTGGCTGGTGAG 2371915 Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCG 55663 || || ||||| || | ||||||||| | || | |||| Sbjct 2371916 TTCCAGGTGGTCAACCCCTGGCTGCTGAAGGACCTGGTCGATCTCGGCCTGTGGTCGGAC 2371975 Query 55664 CAGATCAAGA--CGGATATTGTGCGGAACGGGGGGTCCGTCCAGAA--TCTGGAGATTCC 55719 | || |||| || || | ||| || || || ||||||||||| || | ||| Sbjct 2371976 AACATGAAGAACCGCATCAT-TGCCGAG-GGTGGTTCCGTCCAGAACATCCCCAACATCC 2372033 Query 55720 TCTGCGTC-TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTG 55778 | | | | |||||| | | ||| ||||||||||||||| | ||| || | | Sbjct 2372034 CCAGTGACATCAAGGCGCTGTACAAGACGGTGTGGGAGATCTCCCAGCGGACGATCCTGC 2372093 Query 55779 ACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGG 55838 | ||| || || |||||||||| ||| |||||||| ||||| || |||||| | || Sbjct 2372094 AGATGGCAGCGGACCGTGGTGCGTTCATTGACCAGTCTCAGTCCCTCAACATCCACCTGA 2372153 Query 55839 AGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCA 55898 || | || | ||| |||| | | | ||||||||| ||| ||||||| ||| || | Sbjct 2372154 AGGAGCCCACCATGGGCAAGATCACCAGCATGCACTTTGCCGGCTGGAAGATGGGTCTGA 2372213 Query 55899 AGACGGGTATGTACTATCTGCGGAC 55923 |||||||||||||||| ||||| || Sbjct 2372214 AGACGGGTATGTACTACCTGCGCAC 2372238 >seq4 Length=5028727 Score = 89.7 bits (98), Expect = 6e-13 Identities = 195/288 (68%), Gaps = 8/288 (3%) Strand=Plus/Minus Query 118013 AGCCCCTTGATATGGGAACCGTCCAGATCCGCATCGGTCATGATCATCAGGCGGCCGTAC 118072 || |||||||| || |||||| ||||| ||| ||||||||||||| | | |||||| Sbjct 3703304 AGGCCCTTGATGTGACTACCGTCGTGATCCTGATCAGTCATGATCATCAAGTGACCGTAC 3703245 Query 118073 CGTAAATCTCTCAGGGAGT---TATAAACCTTACCATGTTGGAGCCCGAGGATCTTTTTA 118129 || | | | ||| || |||| |||| || || || || | || || || Sbjct 3703244 CGAAGGCCGC---GGGTGTCGGTATACTCCTTCTTGTGCTGCAGACCCAAGAAGTTCTTG 3703188 Query 118130 AGGTTGGAAAATTCCTCATTTTCCGTCACCTGTTTTATGGTGGCGTCCCGAACGTTGCGC 118189 | || || ||||| ||||| | | ||| | | || ||||| || |||||| || Sbjct 3703187 ATATTCTGAATTTCCTGATTTTTTGAGATCTGGTCGAAGGAAGCGTCACGGACGTTGAGC 3703128 Query 118190 GGCTTACCCCGCAGTGGAAACACGCCAAACTTGTCACGGCCCACAA-CGCTCAAGCCGGC 118248 | ||||| || || || || |||||||| || |||| |||| ||||| | || || Sbjct 3703127 AGTTTACCTCGAAGCGGGAAAACGCCAAAAAGATCCGGGCCAACAACCGCTCGA-CCAGC 3703069 Query 118249 AATAGCAAGGGCCTTCGCCGAGTCACCCTCGGTAATAATAAGAGTGCA 118296 || || || |||| || |||||||| || || | || || ||||| Sbjct 3703068 CATGGCCAGACCCTTGGCAGAGTCACCTTCTGTGAGGATCAGGGTGCA 3703021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215794794000