Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aspergillus_20niger_20[genbank_20GCA_5F001741905.1_202016-09-21] 30 sequences; 35,983,474 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1 147 5e-30 seq11 120 7e-22 seq3 84.2 5e-11 >seq1 Length=4441427 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| ||||| || || || ||||| || || |||||||| ||||| || Sbjct 1018639 CAGATCTTCGTGAAGACTCTTACCGGCAAGACGATTACGCTGGAGGTGGAGAGCTCGGAT 1018698 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| |||||||| || || || || || || ||||||||||| Sbjct 1018699 ACCATTGATAACGTCAAGACTAAGATTCAAGATAAGGAGGGCATTCCCCCGGACCAGCAG 1018758 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||| | ||||||||| | || || ||||||| ||| || Sbjct 1018759 CGTCTCATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACGCTCTCCGATTACAACATC 1018818 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || ||||| || || Sbjct 1018819 CAGAAGGAGAGCACTCTGCACCTGGT 1018844 Score = 141 bits (156), Expect = 2e-28 Identities = 157/207 (76%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || |||||||| ||||| |||||||| | || || ||| || ||| Sbjct 1018411 CAGATCTTCGTCAAGACTCTCACGGGAAAGACGATCACATTGGAAGTTGAATCTTCCGAC 1018470 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| || |||||||| ||||| ||||| ||||| ||||||||||| Sbjct 1018471 ACAATTGATAACGTTAAGACCAAGATTCAAGACAAGGAAGGCATCCCCCCGGACCAGCAG 1018530 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | |||||||| || || ||| | || ||||| | || |||| |||| || ||| | Sbjct 1018531 CGTTTGATCTTCGCTGGTAAGCAGTTGGAGGATGGCCGTAC-CTTGTCCGACTACAACAT 1018589 Query 178103 CCAAAAAGAATCAACACTGCATCTTGT 178129 ||| |||||||| || || || ||||| Sbjct 1018590 CCAGAAAGAATCCACTCTTCACCTTGT 1018616 Score = 138 bits (152), Expect = 3e-27 Identities = 150/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990 |||| || || || || ||||| || |||||||| |||||||| || |||||||||| Sbjct 1018190 TCGTCAAGACCCTGACCGGAAAGACCATCACCCTTGAGGTGGAGTCTTCTGACACCATCG 1018249 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 | || || || |||||||||||||| || || || || ||||||||||| || || | Sbjct 1018250 ACAATGTGAAGACCAAGATTCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTGA 1018309 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 ||||||| ||||| ||||| || ||||| | || || | || || ||| | ||||| | Sbjct 1018310 TCTTCGCTGGAAAGCAGCTGGAGGATGGCCGTACCCTGTCTGACTACAACATTCAAAAGG 1018369 Query 178111 AATCAACACTGCATCTTGT 178129 |||| || || || || || Sbjct 1018370 AATCCACCCTTCACCTCGT 1018388 Score = 134 bits (148), Expect = 3e-26 Identities = 142/187 (76%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| || || || |||||||||||||| || | || |||||||| |||||||| Sbjct 1017901 TCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGCGATACCATCGACAACGTCAAGA 1017960 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 ||||| ||||| || || || |||||||| |||||||| || || ||||||||||||| Sbjct 1017961 CCAAGATCCAGGATAAGGAGGGCATCCCTCCCGACCAGCAGCGTCTGATCTTCGCCGGAA 1018020 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 | ||||| || ||||| | || ||| || || ||| |||| || || || || || | Sbjct 1018021 AGCAGCTGGAGGATGGCCGCACGCTTAGTGACTACAACATCCAGAAGGAGTCTACTCTCC 1018080 Query 178123 ATCTTGT 178129 ||||||| Sbjct 1018081 ATCTTGT 1018087 >seq11 Length=4837238 Score = 120 bits (132), Expect = 7e-22 Identities = 137/183 (75%), Gaps = 6/183 (3%) Strand=Plus/Plus Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCAGACAC 177985 |||||| || || ||||| || || || || |||||||| || || ||| ||||| Sbjct 2951500 TTTCGTCAAGACCCTCACGGGTAAGACCATTACCCTCGACGTCGAGTCGAGC---GACAC 2951556 Query 177986 CATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACG 178045 |||||| |||||||| ||||| |||||||| || || ||||| ||||| ||||| || Sbjct 2951557 CATCGACAACGTCAAGACCAAGATCCAGGACAAGGAGGGTATCCCCCCGGATCAGCAGCG 2951616 Query 178046 ACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCA 178105 ||||||||||| || || ||||| || ||||| | || || ||| || ||| |||| Sbjct 2951617 TCTTATCTTCGCTGGTAAGCAGCTTGAGGATGGCCGCACCCTGAGCGACTACAACATCCA 2951676 Query 178106 AAA 178108 || Sbjct 2951677 GAA 2951679 >seq3 Length=6264253 Score = 84.2 bits (92), Expect = 5e-11 Identities = 92/120 (77%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 178009 TTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGC 178068 ||||| |||| || || ||||| ||||||||||| || || |||||||| || || |||| Sbjct 4514006 TTCAG-ACAAGGAGGGTATCCCCCCGGACCAGCAGCGTCTGATCTTCGCTGGTAAGCAGC 4513948 Query 178069 TCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 |||| || || | |||||| | || || ||| |||| || || || || || || |||| Sbjct 4513947 TCGAGGACGGCCGTACTCTTTCGGACTACAACATCCAGAAGGAGTCCACCCTCCA-CTTG 4513889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730737315820