Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aspergillus_20niger_20[genbank_20GCA_5F001741915.1_202016-09-21] 30 sequences; 36,450,809 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq18 179 5e-39 seq24 109 8e-18 seq14 87.8 3e-11 >seq18 Length=3504694 Score = 179 bits (198), Expect = 5e-39 Identities = 222/299 (74%), Gaps = 5/299 (2%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || ||||||||||| || || |||||||||||||| |||| | Sbjct 126717 GATCTGGCAGATGTAC-AAGAAGGCCGAGGCTTCTTTCTGGACCGCCGAGGAAATCGATC 126659 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTCATCA 1455891 | | || | | ||||| ||| ||| ||||||||||||| | |||||| Sbjct 126658 TGTCCAAGGATTTGCACGACTGGCACAACCGCCTGAACGACGACGAGCGCTACTTCATCT 126599 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 ||||| ||||| || || ||| ||| ||||||||| || ||||||||| | || Sbjct 126598 CCCACGTTCTCGCGTTCTT-CGCTGCCTCCGATGGCATTGTCAACGAGAACCTTGTCGAG 126540 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 ||||| | |||||||| | || ||||| |||| || ||||| ||||||||| Sbjct 126539 CGCTTCAGCGGCGAGGTCCAGGTTCCTGAGGCTCGTTGCTTCTACGGATTCCAGATCATG 126480 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCC 1456070 || || ||||||||||| || |||||||| ||||||||||| |||||| ||||||| || Sbjct 126479 ATGGAGAACATCCACTCCGAGACCTACTCTCTCCTGATCGATACCTACATCAAGGAGCC 126421 Score = 147 bits (162), Expect = 3e-29 Identities = 191/259 (74%), Gaps = 4/259 (2%) Strand=Plus/Minus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 || |||||||||||||||| || ||| | ||||| | | || | ||||| || || Sbjct 126054 ATTATCGTCGAGGCCGTCGGCATTGAGCAGGAGTTCCTGACTGACGCTCTGCCCGTTGCT 125995 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 || | ||||||||| ||| ||| ||||| |||||||| || ||| ||||| ||||||| Sbjct 125994 CTGCTGGGCATGAACTCCAA-GCTGATGTGTCAGTACATCGAGTTT-GTCGCGGACCGCC 125937 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 |||| | ||| |||||| | ||||| ||||| | ||||||| ||| | ||| Sbjct 125936 TGCTGGTGGCCCTCGGCAACA-AGAAGTACTACAACGCCACCAACCCCTTCGACTTCATG 125878 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACGCC 1456761 |||| ||||||||| | ||| ||||||||||| |||||| || || || || ||| Sbjct 125877 GAGTCGATCTCGCTGGCGGGTAAGACCAACTTCTTCGAGAAGCGGGTAGGAGACTACCAG 125818 Query 1456762 AAGGCCGGCGTCACCGCCA 1456780 ||||| || |||| |||| Sbjct 125817 AAGGCTGGTGTCATGGCCA 125799 Score = 104 bits (114), Expect = 3e-16 Identities = 139/188 (74%), Gaps = 4/188 (2%) Strand=Plus/Minus Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGC 1456182 || |||||||| ||||| || ||||||||| | | |||| ||||| ||| || ||| Sbjct 126315 AAGAAGGCCGATTGGGCCATTAAGTGGATCCAGGAC-AGGGAGTCGAC-CTTCGCTCAGC 126258 Query 1456183 GGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCT 1456241 | ||||| | || || || || ||||| ||||| ||||| ||| ||| |||||| Sbjct 126257 GTCTCGTTGCTTTCGCTGCCGTTGAGGGTATCTTCTTCTCCGGCTCCTTCGCTTCCATCT 126198 Query 1456242 TTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGT 1456301 | |||||||||||||| || |||||||| |||| || ||| |||||| | ||| | Sbjct 126197 TCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTC-TCACCTTCTCCAACGAGCTCATCTCT 126139 Query 1456302 CGCGACGA 1456309 || ||||| Sbjct 126138 CGTGACGA 126131 >seq24 Length=3695433 Score = 109 bits (120), Expect = 8e-18 Identities = 199/289 (69%), Gaps = 2/289 (1%) Strand=Plus/Minus Query 259895 ATGTCGCAGCAGTTGTTCACCTCA-GCGACGCCCACGCTCTTTAATGCCGGCACGCCGCG 259953 ||||| ||| ||| ||||| ||| || | || || || || || || || || || | Sbjct 1324963 ATGTCCCAGAAGTACTTCAC-TCACGCCTCCCCGACTCTGTTCAACGCTGGTACTCCCCA 1324905 Query 259954 CCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTA 260013 || ||| | | || ||||| || | |||||||||| || || || || ||||| Sbjct 1324904 GCCTCAGCTTGCCTCTTGCTTCCTCGTCGACATGAAGGAGGACAGCATTGACGGTATCTA 1324845 Query 260014 TGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGC 260073 ||||| | ||| ||||| | ||||||||| | ||||| || || ||| | || Sbjct 1324844 CGACACTTTGAAGACTTGCGCTATGATCTCCAAGACCGCCGGTGGTATTGGTCTGAACGT 1324785 Query 260074 ACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCT 260133 ||| | ||| | | || | ||| | | ||||||||||| |||||||| || Sbjct 1324784 GCACCGCATCCGCTCTACCGGATCTTACATTGGTGGCACCAACGGTACCTCCAACGGTCT 1324725 Query 260134 TGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 ||| ||||||||||| ||||| ||| |||| || | ||||| |||||| Sbjct 1324724 TGTTCCCATGCTTCGGGTTTTCAACAACACTGCCAGATACGTTGACCAG 1324676 >seq14 Length=4837378 Score = 87.8 bits (96), Expect = 3e-11 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 165768 GGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGCGAGATGGCGTCGGCGCTG 165827 |||||||| ||||| |||||||||||| |||||| ||||| ||| |||| |||| ||| Sbjct 2164044 GGCGCCGTTGGTGCTCGCACCACCGAGTCCCAGGTCCACCGTGAGTTGGCCTCGGGTCTG 2164103 Query 165828 CCGCTGCCCATTGGCTTCAAAAACAGCACCGACGGC 165863 | | ||| |||| ||||| ||| | ||||||||| Sbjct 2164104 TCCTTCCCCGTTGGTTTCAAGAACGGTACCGACGGC 2164139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177808306444860