Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aspergillus_20niger_20[genbank_20GCA_5F001931795.1_202017-01-04] 223 sequences; 36,079,011 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq190 201 1e-46 >seq190 Length=682122 Score = 201 bits (222), Expect = 1e-46 Identities = 399/588 (68%), Gaps = 2/588 (0%) Strand=Plus/Minus Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACGAC 53254 ||||| || ||| | |||||||||||| ||| | | | | ||||| ||| || Sbjct 234316 ATGCGTGTTGCCGTTGGTATCCACGGTAGTGACATCGAGAAGGCCATCGAGACCTACCAC 234257 Query 53255 TTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAAT 53314 || ||| ||| |||||||| || |||||| | || || ||||||||||||||||| Sbjct 234256 TTGATGTCCCAGAAGTACTTCACTCACGCCTCCCCGACTCTGTTCAACGCTGGTACTCCC 234197 Query 53315 CACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATC 53374 || |||||| | | |||||||| || | |||||||| ||| || ||||| ||| Sbjct 234196 CAGCCTCAGCTTGCCTCTTGCTTCCTCGTCGACATGAAGGAGGACAGCATTGACGGTATC 234137 Query 53375 TACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC 53434 ||||| || | ||| || || ||||||||| | |||||||| ||| | || Sbjct 234136 TACGACACTTTGAAGACTTGCGCTATGATCTCCAAGACCGCCGGTGGTATTGGTCTGAAC 234077 Query 53435 -TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGG 53493 ||| | | |||| | | ||| | || || || ||||| | || |||| Sbjct 234076 GTGCACCG-CATCCGCTCTACCGGATCTTACATTGGTGGCACCAACGGTACCTCCAATGG 234018 Query 53494 AATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGG 53553 | || || ||||| || || ||||||||||| ||| | ||||| |||||||||| Sbjct 234017 TCTTGTTCCCATGCTTCGGGTTTTCAACAACACTGCCAGATACGTTGACCAGGGTGGCAA 233958 Query 53554 GAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTT 53613 ||||| || | || ||||||||||| ||||| |||||| | || | | ||||| Sbjct 233957 CAAGCGTCCCGGTGCTTTTGCCATCTACCTTGAGCCCTGGCACTCGGATGTCTTCGAGTT 233898 Query 53614 TCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGC 53673 || || || ||| |||||| ||| | || ||| | | ||| || ||||| || Sbjct 233897 CCTGGACCTCCGTAAGAATCACGGTAAGGAGGAGGTCAGAGCCCGCGATCTGTTCTATGC 233838 Query 53674 TCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGAT 53733 ||||||| |||||| || |||||| | || ||| | ||| || ||| ||| | Sbjct 233837 CCTGTGGACTCCGGATCTGTTCATGAAGCGTGTTGAGGCGAACGGCGACTGGACTCTGTT 233778 Query 53734 GTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTT 53781 ||||| ||||| ||| ||| | | |||||||||||| ||||| Sbjct 233777 CTGCCCCAACGAAGCCCCTGGCTTGGCTGATGTCTACGGTGACGAGTT 233730 Score = 132 bits (146), Expect = 5e-26 Identities = 300/445 (67%), Gaps = 7/445 (2%) Strand=Plus/Minus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||| | |||| || || || ||||| || || || ||||||| ||||| | Sbjct 232998 CGCAACAGCTTGCTGGTCGCCCCCATGCCCACTGCCAGTACCAGTCAGATCTTGGGCTTC 232939 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 |||||| |||||||| || || ||||||||||| ||||| | | || |||||| Sbjct 232938 AACGAGTGCTTCGAGCCTTATACCTCCAACATCTACTCCCGCCGTGTCTTGGCTGGTGAG 232879 Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCG 55663 || || ||||| || | ||||||||| | || | |||| Sbjct 232878 TTCCAGGTGGTCAACCCCTGGCTGCTGAAGGACCTGGTCGATCTCGGCCTGTGGTCGGAC 232819 Query 55664 CAGATCAAGA--CGGATATTGTGCGGAACGGGGGGTCCGTCCAGAA--TCTGGAGATTCC 55719 | || |||| || || | ||| || || || ||||||||||| || | ||| Sbjct 232818 AACATGAAGAACCGCATCAT-TGCCGAG-GGTGGTTCCGTCCAGAACATCCCCAACATCC 232761 Query 55720 TCTGCGTC-TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTG 55778 | | | | |||||| | | ||| ||||||||||||||| | ||| || | | Sbjct 232760 CCAGTGACATCAAGGCGCTGTACAAGACGGTGTGGGAGATCTCCCAGCGGACGATCCTGC 232701 Query 55779 ACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGG 55838 | ||| ||| || |||||||||| ||| |||||||| ||||| || |||||| | || Sbjct 232700 AGATGGCTGCGGACCGTGGTGCGTTCATTGACCAGTCTCAGTCCCTCAACATCCACCTGA 232641 Query 55839 AGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCA 55898 || | || | ||| |||| | | | ||||||||| ||| ||||||| ||| || | Sbjct 232640 AGGAGCCCACCATGGGCAAGATCACCAGCATGCACTTTGCCGGCTGGAAGATGGGTCTGA 232581 Query 55899 AGACGGGTATGTACTATCTGCGGAC 55923 |||||||||||||||| ||||| || Sbjct 232580 AGACGGGTATGTACTACCTGCGCAC 232556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547214474635400