Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aspergillus_20niger_20[genbank_20GCA_5F002211485.1_202017-06-30] 23 sequences; 35,738,354 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq4 244 9e-60 seq20 127 2e-24 >seq4 Length=2618736 Score = 244 bits (270), Expect = 9e-60 Identities = 493/729 (68%), Gaps = 2/729 (0%) Strand=Plus/Plus Query 23249 TACTTTTGGTACAACGCGTCAAATTCGGCACCGTA-ACAGTCGGCCAGGCCGGGCGATTG 23307 ||||| | ||| | ||||| || ||| ||||||| ||| || |||| ||| || | || Sbjct 314380 TACTTCTCGTAGAGGGCGTCGAACTCGTCACCGTAGACA-TCAGCCAAGCCAGGGGCTTC 314438 Query 23308 CATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGG 23367 | || || | ||| |||| || ||||| || |||| || |||||||| Sbjct 314439 GTTGGGGCAGAACAGAGTCCAGTCGCCGTTCGCCTCAACACGCTTCATGAACAGATCCGG 314498 Query 23368 TATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTT 23427 |||| || || |||||||| |||||||| | |||||||| || ||| |||||| Sbjct 314499 AGTCCACAGGGCATAGAACAGATCGCGGGCTCTGACCTCCTCCTTACCGTGGTTCTTACG 314558 Query 23428 CAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCC 23487 | |||| || || || || |||| ||||| ||||| ||||| | |||||| || || Sbjct 314559 GAGGTCCAGGAACTCGAAGACATCCGAGTGCCAGGGCTCAAGGTAGATGGCAAAAGCACC 314618 Query 23488 CGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCAT 23547 || | ||| ||||| ||||| || ||||| | ||| ||||||||| | || | ||||| Sbjct 314619 GGGACGCTTGTTGCCACCCTGGTCAACGTATCTGGCAGTGTTGTTGAAAACCCGAAGCAT 314678 Query 23548 CGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAAC 23607 || || ||||||||||| | ||| ||| | | || || | | || | Sbjct 314679 GGGAACAAGACCGTTGGAGGTACCGTTGGTGCCACCAATGTAAGATCCGGTAGAGCGGAT 314738 Query 23608 GTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAG 23667 | ||| |||| | ||| || || ||| | | || || ||||| ||||| |||| Sbjct 314739 GCGGTGCACGTTCAGACCAATACCACCGGCGGTCTTGGAGATCATAGCGCAAGTCTTCAA 314798 Query 23668 AGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACAT 23727 |||||||||||| || || ||||||||||| || | |||| | ||| || || | | Sbjct 314799 AGTGTCGTAGATACCGTCAATGCTGTCCTCCTTCATGTCGACGAGGAAGCAAGAGGCAAG 314858 Query 23728 TTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATT 23787 || | | ||| ||| | || |||||| |||||| |||||| || ||||| | Sbjct 314859 CTGAGGCTGGGGAGTACCAGCGTTGAACAGAGTCGGGGAGGCGTGAGTGAAGTACTTCTG 314918 Query 23788 CGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGC 23847 ||||| | | ||| || |||||||| || ||||| ||||| ||||| | ||| Sbjct 314919 GGACATCAAGTGGTAGGTCTCGATGGCCTTCTCGATGTCACTACCGTGGATACCAACGGC 314978 Query 23848 GACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATA 23907 || ||||||| || || || || | ||| || ||||| || ||||| || Sbjct 314979 AACACGCATCAGCAGGTGCTGGGGACGCTCAGCCACCTTTCCGTTGATCCGCAACAGGTA 315038 Query 23908 TGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTAT 23967 ||| || | || || || || || || ||| ||||| || ||||| |||| || || Sbjct 315039 TGACCGCTCCAGGGTCTTGAAGCCGAAGAAGTTGTAGTTGAAATCACGGTCGTATACAAT 315098 Query 23968 GGCCGAATT 23976 ||||| || Sbjct 315099 AGCCGAGTT 315107 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||||| || || || |||||||| | || |||||| | ||| Sbjct 1670642 ATGCAGATCTTCGTCAAGACTCTCACGGGAAAGACGATCACATTGGAAGTTGAATCTTCC 1670583 Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || |||| | | || ||| | | ||||||||||| | || || ||||| Sbjct 1670582 GACACAATTGATAACGTTAAGACCAAGATTCAAG-ACAAGGAAGGCATCCCCCCGGACCA 1670524 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||| | || |||||||| || |||||||| || || || ||| || || Sbjct 1670523 GCAGCGTTTGATCTTCGCTGGTAAGCAGTTGGAGGATGGCCGTACCTTGTCCGACTACAA 1670464 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || |||||||| |||||||| || || ||| | || | || |||| Sbjct 1670463 CATCCAGAAAGAATCCACTCTTCACCTTGTCCTTCGTCTCCGTGGTGGTA 1670414 Score = 102 bits (112), Expect = 7e-17 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 31203 TCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCG 31262 |||| ||||| ||||| || || || |||||| | || || || | || |||| ||| Sbjct 1670860 TCGTCAAGACCCTGACCGGAAAGACCATCACCCTTGAGGTGGAGTCTTCTGACACCATCG 1670801 Query 31263 AAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTA 31321 | | || || || ||| | ||||||||| ||| | || || |||||||||||||| Sbjct 1670800 ACAATGTGAAGACCAAGATTCA-GGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTG 1670742 Query 31322 ATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAA 31381 || |||||||| || ||| |||| || || || || || ||||||||||| Sbjct 1670741 ATCTTCGCTGGAAAGCAGCTGGAGGATGGCCGTACCCTGTCTGACTACAACATTCAAAAG 1670682 Query 31382 GAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || ||||| || || ||| | ||| | || |||| Sbjct 1670681 GAATCCACCCTTCACCTCGTCCTTCGTCTGCGTGGTGGTA 1670642 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||||| || ||||| ||||| || | || || || || Sbjct 1670414 ATGCAGATCTTCGTGAAGACTCTTACCGGCAAGACGATTACGCTGGAGGTGGAGAGCTCG 1670355 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | || | ||||| || ||| | | | ||||| ||| | || || ||||| Sbjct 1670354 GATACCATTGATAACGTCAAGACTAAGATTCAAG-ATAAGGAGGGCATTCCCCCGGACCA 1670296 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 ||||||||| || |||||||| || ||||||||||| | | | || | |||||| | Sbjct 1670295 GCAGCGTCTCATCTTCGCTGGTAAGCAGTTGGAAGA-TGGACGTACGCTCTCCGATTACA 1670237 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||| || || || ||||| || ||||| || Sbjct 1670236 ACATCCAGAAGGAGAGCACTCTGCACCTGGTGCT 1670203 >seq20 Length=3442689 Score = 127 bits (140), Expect = 2e-24 Identities = 329/494 (67%), Gaps = 18/494 (4%) Strand=Plus/Plus Query 57909 ATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGG---CCACGTTC 57965 || ||||||||||| || ||| | || || ||||| | | || || | || ||| Sbjct 3346896 ATTGCCAAGAAGGCCGATTGGGCCATTAAGTGGATCCAG---GACAGGGAGTCGACCTTC 3346952 Query 57966 GCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCG 58025 || || | || | || ||||| ||||| || ||||| ||||| || || ||| || Sbjct 3346953 GCTCAGCGTCTCGTTGCTTTCGCTGCCGTTGAGGGTATCTTCTTCTCCGGTTCCTTCGCT 3347012 Query 58026 GCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTG 58085 | || || ||| | ||||| || || || ||||| || || || || ||||||| | Sbjct 3347013 TCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTCACCTTCTCCAACGAGCTC 3347072 Query 58086 ATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTC 58145 || || || ||||||||||| || || || || || ||||| ||| ||| ||| | Sbjct 3347073 ATCTCTCGTGACGAGGGTCTGCACACCGACTTCGCTTGCCTGCTGTTCTCCCACCT---- 3347128 Query 58146 AATAAACCGACGCGG--GATCGCATCTTG--GACATTATCACCGAGGCGGTCGCGATCGA 58201 | ||||| | | | | | | ||| ||||| ||| |||||| |||| || || Sbjct 3347129 GAACAACCGCCCCAGCAAACAGGTTGTTGAAGACATCATCGTCGAGGCCGTCGGCATTGA 3347188 Query 58202 AAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGAT 58261 | ||||| | || || || || || || || |||| || |||||| | |||| Sbjct 3347189 GCAGGAGTTCCTGACTGACGCTCTGCCCGTTGCTCTGCTGGGCATGAACTCCAAGCTGAT 3347248 Query 58262 GTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACT--GATTGGAGAGCGT 58319 || ||||||| |||||||| || ||| | || || | | || | ||| || Sbjct 3347249 GTGTCAGTACATCGAGTTTGTCGCGGACCGCCTGCTGGTGGCCCTCGGCAACAAGA-AGT 3347307 Query 58320 CATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACA 58379 | |||||| | | || || || || || ||| | ||||||||| | ||| ||||| Sbjct 3347308 -ACTACAACGCCACCAACCCCTTCGACTTCATGGAGTCGATCTCGCTGGCGGGTAAGACC 3347366 Query 58380 AACTTTTTCGAAAA 58393 ||||| ||||| || Sbjct 3347367 AACTTCTTCGAGAA 3347380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766271842160