Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aspergillus_20niger_20[genbank_20GCA_5F002211485.1_202017-06-30] 23 sequences; 35,738,354 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq20 131 2e-25 seq4 125 9e-24 >seq20 Length=3442689 Score = 131 bits (144), Expect = 2e-25 Identities = 161/218 (74%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632 |||| || || ||||| ||| ||||||||||||||| | | || | ||||| || Sbjct 3347119 AACAGCAGGCAAGCGAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAG 3347060 Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 || ||||| || ||||| || |||||||| || ||||| || ||||||||||| || ||| Sbjct 3347059 AAGGTGAGACCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCGAAGGAACCG 3347000 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCT-CTCCATAACCG--GCG 33749 || |||||||| || || || ||||| || |||| || | || | | || | Sbjct 3346999 GAGAAGAAGATACCCTCAACGGCAGCGAAAGCAACGAGACGCTGAGCGAAGGTCGACTCC 3346940 Query 33750 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 33787 ||||| || |||||||| ||||||||||||||||| Sbjct 3346939 CTGTCCTGGATCCACTTAATGGCCCAATCGGCCTTCTT 3346902 >seq4 Length=2618736 Score = 125 bits (138), Expect = 9e-24 Identities = 466/724 (64%), Gaps = 10/724 (1%) Strand=Plus/Plus Query 63189 TCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGAC 63248 ||||||||||| || | |||| |||| | ||| ||| | || || | || | | Sbjct 314398 TCGAACTCGTCACCGTAGACATCAGCCAAGCCAGGGGCTTCGTTGGGGCAGAACAGAGTC 314457 Query 63249 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 63307 || || |||| ||| || || ||||| || ||||| ||| |||| || || ||| || Sbjct 314458 CAGTCGCCGTTCGCCTCAACACGCTTCATGAACAGATCCGGAGTCCACAGGGC-ATAGAA 314516 Query 63308 TAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63367 ||||| | | ||| ||||| || || ||||| || || |||||| | | Sbjct 314517 CAGATCGCGGGCTCTGACCTCCTCCTTACCGTGGTTCTTACGGAGGTCCAGGAACTCGAA 314576 Query 63368 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63427 | ||| || ||||| || || | ||| ||||| | | | || || || ||||| || || Sbjct 314577 GACATCCGAGTGCCAGGGCTCAAGGTAGATGGCAAAAGCACCGGGACGCTTGTTGCCACC 314636 Query 63428 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63487 ||| || | |||||| || ||||| || |||| | | ||| |||| || |||||| || Sbjct 314637 CTGGTCAACGTATCTGGCAGTGTTGTTGAAAACCCGAAGCATGGGAACAAGACCGTTGGA 314696 Query 63488 TATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAAT--ATTACTAATTGATAGA 63545 |||| ||||| || || || ||| | | || || | | || ||| Sbjct 314697 GGTACCGTTGGTGCCACCAATGTAAGATCCGGTAGAGCGGATGCGGTGCACGTT--CAGA 314754 Query 63546 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCT 63605 || || || || || | || ||||| | ||||| || || ||||| ||||| || Sbjct 314755 CCAATACCACCGGCGGTCTTGGAGATCATAGCGCAAGTCTTCAAAGTGTCGTAGATACCG 314814 Query 63606 TCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTT 63665 || ||||| || || |||||| | || || || | | || | | | ||| Sbjct 314815 TCAATGCTGTCCTCCTTCATGTCGACGAGGAAGCAAGAGGCAAGCTGAGGCTGGGGAGTA 314874 Query 63666 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTAC 63725 || || || || | || || || ||||| || || | || | || | | | ||| Sbjct 314875 CCAGCGTTGAACAGAGTCGGGGAGGCGTGAGTGAAGTACTTCTGGGACATCAAGTGGTAG 314934 Query 63726 GTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 63785 ||||| || || || || || | || || || || || |||||||| | || | Sbjct 314935 GTCTCGATGGCCTTCTCGATGTCACTACCGTGGATACCAACGGCAACACGCATCAGCAGG 314994 Query 63786 TGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTT 63845 ||||| || | ||| | | || ||| || ||||| ||| || |||| || Sbjct 314995 TGCTGGGGACGCTCAGCCACCTTTCCGTTGATCCGCAACAGGTATGACCGCTCCAGGGTC 315054 Query 63846 TTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCT 63903 || || || || ||||||| ||||| || || ||||| | |||| |||| || |||| Sbjct 315055 TTGAAGCCGAAGAAGTTGTAGTTGAAA--TCACGGTCGTATACAATAGCCGAGTTAAGCT 315112 Query 63904 TATC 63907 ||| Sbjct 315113 CATC 315116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817418927440