Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aspergillus_20niger_20[genbank_20GCA_5F002211485.1_202017-06-30] 23 sequences; 35,738,354 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq20 98.7 1e-15 >seq20 Length=3442689 Score = 98.7 bits (108), Expect = 1e-15 Identities = 253/379 (67%), Gaps = 10/379 (3%) Strand=Plus/Minus Query 92927 TCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTACA 92986 || || ||||| || ||||||||| |||||| | | ||||| || || ||| || Sbjct 3347275 TCCGCGACAAACTCGATGTACTGACACATCAGCTTGGAGTTCATGCCCAGCAGAGCAACG 3347216 Query 92987 GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTATT 93046 || |||||||| |||| ||| || | ||| || | ||||| || | ||| ||| Sbjct 3347215 GGCAGAGCGTCAGTCAGGAACTCCTGCTCAATGCCGACGGCCTCGACGATGATGTCTTCA 3347156 Query 93047 ACTCTACTATTTGGTGGTTT--TTGTACGACATAATTGTACATTAAGCACGCAAAGTCGG 93104 || || |||| ||| |||| | | | | ||| | ||| || ||||||| Sbjct 3347155 ACAAC-CTGTTTGCTGGGGCGGTTGTTC-AGGTGGGAGAACAGCAGGCAAGCGAAGTCGG 3347098 Query 93105 TATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTC 93164 | || | ||| ||||| || || || | ||| ||| ||| || | ||| || | || | Sbjct 3347097 TGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTGAGACCAGGCATGAGAC 3347038 Query 93165 CTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGG 93224 | || ||||||||||| || || ||||| || ||| || || || ||||| || |||| Sbjct 3347037 CACGCTTCTTGAGCCAGAAGATGGAAGCGAAGGAACCGGAGAAGAAGATACCCTCAACGG 3346978 Query 93225 CTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTG--CT-GATCCATTTTA 93281 | || || || || | ||| | || || | || | ||| || |||||| || | Sbjct 3346977 CAGCGAAAGCAACGAGACGCTGAGCGAA---GGTCGACTCCCTGTCCTGGATCCACTTAA 3346921 Query 93282 AAGCCCAATCGGCtttttt 93300 ||||||||||| || || Sbjct 3346920 TGGCCCAATCGGCCTTCTT 3346902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860639902520