Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aspergillus_20niger_20[genbank_20GCA_5F002211485.1_202017-06-30] 23 sequences; 35,738,354 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq20 224 2e-53 seq4 145 1e-29 >seq20 Length=3442689 Score = 224 bits (248), Expect = 2e-53 Identities = 352/499 (71%), Gaps = 11/499 (2%) Strand=Plus/Minus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| ||||||||||| ||| ||| || || || |||||||| |||| ||||| Sbjct 3347381 CTTCTCGAAGAAGTTGGTCTTACCCGCCAGCGAGATCGACTCCATGAAGTCGAAGGGGTT 3347322 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 | ||| ||| |||| ||||| ||| |||||| | ||| || ||||| || Sbjct 3347321 GGTGGCGTTGTAGTACTTCTTGTTGCCGAGGGCCACCAGCAGGCGGTCCGCGACAAACTC 3347262 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| ||||||| ||| |||| || |||||||| |||||| || || || | Sbjct 3347261 GATGTACTGACACATCAGCTTGGAGTTCATGCCCAGCAGAGCAACGGGCAGAGCGTCAGT 3347202 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAA--TCTGCGA-GACACGTTCG-T 159884 ||| ||||||| |||||| |||| || ||| | | ||| | | || ||| | | Sbjct 3347201 CAGGAACTCCTGCTCAATGCCGACGGCCTCGACGATGATGTCTTCAACAACCTGTTTGCT 3347142 Query 159885 ACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTC 159944 ||| ||| || ||| ||||| ||||| || |||||| |||||| | Sbjct 3347141 GGGGCGG-TTGTTCA------GGTGGGAGAACAGCAGGCAAGCGAAGTCGGTGTGCAGAC 3347089 Query 159945 CCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTT 160004 ||||||| |||||||||| ||||||||| | | |||| || ||||||| |||||| | Sbjct 3347088 CCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTGAGACCAGGCATGAGACCACGCTTCT 3347029 Query 160005 TGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACG 160064 ||||||| || |||| || || | |||| || ||||| ||||| ||||| || || | Sbjct 3347028 TGAGCCAGAAGATGGAAGCGAAGGAACCGGAGAAGAAGATACCCTCAACGGCAGCGAAAG 3346969 Query 160065 CCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCAG 160124 | ||||| | || | | || | | | |||| ||| ||||| | ||||||| || | Sbjct 3346968 CAACGAGACGCTGAGCGAAGGTCGACTCCCTGTCCTGGATCCACTTAATGGCCCAATCGG 3346909 Query 160125 CCTTCTTTGCGATGCACGG 160143 ||||||| || ||||| || Sbjct 3346908 CCTTCTTGGCAATGCAGGG 3346890 >seq4 Length=2618736 Score = 145 bits (160), Expect = 1e-29 Identities = 457/692 (66%), Gaps = 22/692 (3%) Strand=Plus/Plus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTT-CTCAGATAGTACATGC 203897 || ||| || |||||||| |||| | || | |||| | | | ||| |||||||| | Sbjct 313187 CTGGTCGACGGTGAACTGGATGG-GCGCAGAGGCGGCCATCGTGCGCAGGTAGTACATAC 313245 Query 203898 CGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGG 203957 | ||||| || ||| ||| ||| ||| | ||||||| | | |||| || | ||| Sbjct 313246 CCGTCTTCAGACCCATCTTCCAGCCGGCAAAGTGCATGCTGGTGATCTTGCCCATGGTGG 313305 Query 203958 GGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGG 204017 | || || ||| ||||| || ||||| ||||| ||||| | | || || || | Sbjct 313306 GCTCCTTCAGGTGGATGTTGAGGGACTGAGACTGGTCAATGAACGCACCACGGTCCGCTG 313365 Query 204018 CCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA-CGTCTCTGGTG 204076 |||| | | || ||| ||| || |||||||||||||||||| ||| || || || || Sbjct 313366 CCATCTGCAGGATCGTCCGCTGGGAGATCTCCCACACCGTCTTGTACAGCGCCT-TGATG 313424 Query 204077 TGT-TGAGGCACATCTTCCC-ACGTCCTGATCG-AGCCGTTGTCGGCCATCAGTCTCATC 204133 | || || || || | || ||| || | || ||||| || | | || Sbjct 313425 TCACTGGGG---ATGTTGGGGATGTTCTGGACGGAACCACCCTCGGCAATGATGCGGTTC 313481 Query 204134 CTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATG 204193 || | | ||| ||||| ||| | || ||| ||| || ||| |||||||| Sbjct 313482 TTCATGTTGTCCGACCACAGGCCGAGATCGACCAGGTCCTTCAGCAGCCAGGGGTTGACC 313541 Query 204194 ATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAAC 204253 | ||| || || || | || || | |||| | | | |||| |||| | || ||||| Sbjct 313542 ACCTGGAACTCACCAGCCAAGACACGGCGGGAGTAGATGTTGGAGGTGTAAGGCTCGAAG 313601 Query 204254 GCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGG 204313 ||||||| ||| || |||||| ||| ||||| ||||||||||| || | |||| | Sbjct 313602 CACTCGTTGAAGCCCAAGATCTGACTGGTACTGGCAGTGGGCATGGGGGCGACCAGCAAG 313661 Query 204314 GAGTTGCGCACACCGTATTTTTG--GACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCG 204371 |||||| ||||| | | | | || | || ||| |||| | |||||| | Sbjct 313662 CTGTTGCGGACACC--AGTCTGGGCGATCTTGGCCTTGAGAGCAGCCCAGTCCCAGAGGT 313719 Query 204372 CACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCT 204431 || |||| | | ||||||||||| |||||| ||| || || ||| || |||| Sbjct 313720 CAGTGGGAGTGCGGTCCCACATGTCGTACTGAAGGATACCCTGGGAGACAGGAGATCCCT 313779 Query 204432 TGTACGTCGGATAAG-GCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCA---TGGCG 204487 ||| ||| |||| | || ||| | || || | | ||||||||| || ||| Sbjct 313780 CGTAGGTCTCGTAAGTTCCGA-ACTCCTTGGCGAGATCGGACGAGGCGGTCAAACCAGCG 313838 Query 204488 TGATAGTACATGGTCTCAAAGATCTGAACGTT 204519 |||||| |||||||| |||||||| | ||| Sbjct 313839 TGATAG---ATGGTCTCGAAGATCTGGATGTT 313867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795154971392880