Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aspergillus_20niger_20[genbank_20GCA_5F002211485.1_202017-06-30] 23 sequences; 35,738,354 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq4 159 6e-34 seq20 129 1e-24 >seq4 Length=2618736 Score = 159 bits (176), Expect = 6e-34 Identities = 374/557 (67%), Gaps = 12/557 (2%) Strand=Plus/Plus Query 221945 TAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACAC 222004 ||||| ||| |||| |||||||| | || ||| ||| || | ||| || Sbjct 314389 TAGAGGGCGTCGAACTCGTCACCGTAGACATCAGCCAAGCCAGGGGCTTCGTTGGGGCAG 314448 Query 222005 ATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGC 222064 | |||| |||||| ||| | | || | || |||||| || ||||| ||||||| Sbjct 314449 AACAGAGTCCAGTCGCCGTTCGCCTCAACACGCTTCATGAACAGATCCGGAGTCCACAGG 314508 Query 222065 GCCTGAAAGAGATCTCTGGTCCGCTG--CTCCTCCACGCCGTTGTTTTTCCTCAGATCCA 222122 || | || ||||| | || | ||| ||||||| |||| ||| || | || |||| Sbjct 314509 GCATAGAACAGATCGCGGG--CTCTGACCTCCTCCTTACCGTGGTTCTTACGGAGGTCCA 314566 Query 222123 AAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182 ||||| || | || | |||||| ||||| || |||| ||| | ||| ||||| |||| Sbjct 314567 GGAACTCGAAGACATCCGAGTGCCAGGGCTCAAGGTAGATGGCAAAAGCACCGGGACGCT 314626 Query 222183 TGTTGCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACC 222241 ||||||||||||| || || || ||| | |||||| | ||||| | || || Sbjct 314627 TGTTGCCACCCTGGTCAACGTATCT-GGCAGTGTTGTTGAAAACCCGAAGCATGGGAACA 314685 Query 222242 AGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTG 222301 || |||||||| |||||||||||| |||||| | ||| | | || | | | Sbjct 314686 AGACCGTTGGAGGTACCGTTGGTGCCACCAATGTAAGATCCGGTAGAGC---GGATGCGG 314742 Query 222302 -GCA--GACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTG 222358 ||| || || |||||||||||| || |||||||| ||||| |||| | |||| Sbjct 314743 TGCACGTTCAGACCAATACCACCGGCGGTCTTGGAGATCATAGCGCAAGTCTTCAAAGTG 314802 Query 222359 TCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGA 222418 || ||| || || || ||||||||| | || | || || ||||| | | |||| Sbjct 314803 TCGTAGATACCGTCAATGCTGTCCTCCTTCATGTCGACGAGGAAGCAAGAGGCAAGCTGA 314862 Query 222419 GATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGAC 222478 | | || | || ||||| ||||| || || |||||| || ||||| | ||| Sbjct 314863 GGCTGGGGAGTACCAGCGTTGAACAGAGTCGGGGAGGCGTGAGTGAAGTACTTCTGGGAC 314922 Query 222479 ATCAGATCGTACGTCTC 222495 |||| | ||| ||||| Sbjct 314923 ATCAAGTGGTAGGTCTC 314939 >seq20 Length=3442689 Score = 129 bits (142), Expect = 1e-24 Identities = 323/492 (66%), Gaps = 11/492 (2%) Strand=Plus/Plus Query 25834 TGGGCCATGAAGTGGATCAACAGCCAGAGCG-CTACGTTTGGCGAGCGGCTGGTAGCCTT 25892 |||||||| ||||||||| | | ||| | | | || || | |||| || || || || Sbjct 3346914 TGGGCCATTAAGTGGATCCAG-GACAGGGAGTCGACCTTCGCTCAGCGTCTCGTTGCTTT 3346972 Query 25893 TGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCA 25952 ||||| || ||||| ||||| ||| |||||| || || ||||||||||||||||| | Sbjct 3346973 CGCTGCCGTTGAGGGTATCTTCTTCTCCGGTTCCTTCGCTTCCATCTTCTGGCTCAAGAA 3347032 Query 25953 GAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCT 26012 | || |||||| || || ||| ||||||||||||||| | ||||||||||| Sbjct 3347033 GCGTGGTCTCATGCCTGGTCTCACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGTCT 3347092 Query 26013 CCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAGA 26072 |||| || || || |||||||| | | | |||| || | || || || | Sbjct 3347093 GCACACCGACTTCGCTTGCCTGCTGTTCTC---CCACCTGAACAACCGCCCCAGCAAACA 3347149 Query 26073 GACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNN 26132 | || | |||||| ||||| || | || ||| ||||||| | Sbjct 3347150 GGTTGTTGAAGACATCATCGTCGAGGCCGTCGGCATTGAGCAGGAGTTCCTGACTGACGC 3347209 Query 26133 NNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTATGT 26192 ||||||||||| || || ||| | || ||||| |||| ||| Sbjct 3347210 TCTGCCCGTTGCTCTGCTGGGCATGAACTCCAAGCTGATGTGTCAGTACATCGAGTTTGT 3347269 Query 26193 GGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGACTCTACAGTACGC--CTAACCC 26249 || |||| ||||| ||| | || || | | ||||| |||| | ||||| Sbjct 3347270 CGCGGACCGCCTGCTGGTGGC-CCTCGGCAACAAGAAGTACTACA--ACGCCACCAACCC 3347326 Query 26250 GTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGT 26309 |||||||| ||||| || ||| ||| || |||||||||||||| || ||| |||| Sbjct 3347327 CTTCGACTTCATGGAGTCGATCTCGCTGGCGGGTAAGACCAACTTCTTCGAGAAGCGGGT 3347386 Query 26310 CGGCGACTATCA 26321 || ||||| || Sbjct 3347387 AGGTGACTACCA 3347398 Score = 98.7 bits (108), Expect = 2e-15 Identities = 163/234 (70%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| |||||||||||||||| | ||| |||||||||||| || ||||||||| Sbjct 3346501 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACCGCCGAGGAAATTGATCTG 3346560 Query 25537 GCCAAGGACATGGACGGCTGGTA----CGCTCTATCCAAAGACGAGCAGCATTTTCTCAA 25592 ||||||| || ||| |||| | ||| || | | ||||||| | || || Sbjct 3346561 TCCAAGGATTTGCACGACTGGCACAACCGC-CTGAACGACGACGAGCGCTACTTCATCTC 3346619 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 |||| | || ||||| || ||||| ||||| || || |||||||| || |||| | Sbjct 3346620 CCACGTTCTCGCGTTCTTCGCTGCCTCCGATGGCATTGTCAACGAGAACCTTGTCGAGCG 3346679 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 |||| | | || || ||| ||||| || |||||||| |||||||| Sbjct 3346680 CTTCAGCGGCGAGGTCCAGGTTCCCGAGGCTCGTTGCTTCTACGGATTCCAGAT 3346733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844532957120