Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aspergillus_20niger_20[genbank_20GCA_5F002211485.1_202017-06-30] 23 sequences; 35,738,354 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq20 96.9 3e-15 seq14 91.5 1e-13 >seq20 Length=3442689 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/225 (70%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 47046 GAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGC 47105 ||||| || |||| || ||||||| | |||| || |||||||| || |||||||| Sbjct 3347172 GAGGCCGTCGGCATTGAGCAGGAGTTCCTGACTGACGCTCTGCCCGTTGCTCTGCTGGGC 3347231 Query 47106 ATGAACGCACAGTCTATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAG 47165 |||||| | || ||||| | || || |||||||| ||||| || ||| ||||| Sbjct 3347232 ATGAACTCCAAGCTGATGTGTCAGTACATCGAGTTTGTCGCGGACCGCCTGCTGGTGGCC 3347291 Query 47166 CTCGGACAAC-CGAAATATTTTAATGCTCGTAATCCGTTTGAGTTTATGAACAACATTTC 47224 ||||| |||| ||| || | || || || || || || || ||| | || || Sbjct 3347292 CTCGG-CAACAAGAAGTACTACAACGCCACCAACCCCTTCGACTTCATGGAGTCGATCTC 3347350 Query 47225 GCTCGAGGGCAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGTA 47269 ||| | ||| || ||||| || |||||||| || || || || || Sbjct 3347351 GCTGGCGGGTAAGACCAACTTCTTCGAGAAGCGGGTAGGTGACTA 3347395 >seq14 Length=2507526 Score = 91.5 bits (100), Expect = 1e-13 Identities = 99/129 (77%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 51741 TTGCCCAAGTCGCCGACGTGGCGCATCGCCGCGTTCGG-AGCGCCGTGGTCGCTGCCGGT 51799 ||||| | ||| |||||||| ||| ||| || |||| ||| |||||| ||||| Sbjct 853188 TTGCCAAGGTCACCGACGTGACGC-TCGTCGTCCTCGGGAGCACCGTGGGTCTTGCCGAA 853246 Query 51800 GGGGTTGAAGTGTTCGCCCGCCGACGTGCAGCCGTTGCTGGTGTCGCCGAATTCGTGCAC 51859 |||||||||||| ||| || || |||||||||||| || |||| ||||| | ||| || Sbjct 853247 GGGGTTGAAGTGAGGGCCAGCGGAGGTGCAGCCGTTGGTGTTGTCACCGAACTGGTGGAC 853306 Query 51860 GTGGAATCC 51868 |||||| || Sbjct 853307 GTGGAAGCC 853315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476611062974280