Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aspergillus_20niger_20[genbank_20GCA_5F002211485.1_202017-06-30] 23 sequences; 35,738,354 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq4 140 4e-28 seq20 100 4e-16 >seq4 Length=2618736 Score = 140 bits (154), Expect = 4e-28 Identities = 469/723 (65%), Gaps = 8/723 (1%) Strand=Plus/Plus Query 69517 TCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGAC 69576 ||||| || || || | |||||| |||| ||||| ||| || || || | || | | Sbjct 314398 TCGAACTCGTCACCGTAGACATCAGCCAAGCCAGGGGCTTCGTTGGGGCAGAACAGAGTC 314457 Query 69577 CACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATA-AA 69635 || | | | ||| ||| || ||||| || ||||| ||| |||| || || ||| || Sbjct 314458 CAGTCGCCGTTCGCCTCAACACGCTTCATGAACAGATCCGGAGTCCACAGGGC-ATAGAA 314516 Query 69636 GAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCAT 69695 ||||| | || ||| || || || || || || || || || ||||| | Sbjct 314517 CAGATCGCGGGCTCTGACCTCCTCCTTACCGTGGTTCTTACGGAGGTCCAGGAACTCGAA 314576 Query 69696 AATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCC 69755 | ||| || ||||| || || || || || || | | || || || || || || || Sbjct 314577 GACATCCGAGTGCCAGGGCTCAAGGTAGATGGCAAAAGCACCGGGACGCTTGTTGCCACC 314636 Query 69756 CTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGA 69815 ||| || | ||||||||||||||| || | || | ||||| |||| || ||| || || Sbjct 314637 CTGGTCAACGTATCTGGCAGTGTTGTTGAAAACCCGAAGCATGGGAACAAGACCGTTGGA 314696 Query 69816 TTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACC 69875 |||| || || ||| ||| ||| ||| | | ||| || | ||||| Sbjct 314697 GGTACCGTTGGTGCCACCAATGTAAGATCCGGTAGAGCGGATGCGGTGCACGTTCAGACC 314756 Query 69876 TATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTC 69935 || || || || | || ||||| | ||| ||| ||||| ||||| || ||||| || Sbjct 314757 AATACCACCGGCGGTCTTGGAGATCATAGCGCAAGTCTTCAAAGTGTCGTAGATACCGTC 314816 Query 69936 TATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCC 69995 ||||| || || |||||| | || || || | | ||| | || ||| || Sbjct 314817 AATGCTGTCCTCCTTCATGTCGACGAGGAAGCAAGAGGCAAGCTGAGGCTGGGGAGTACC 314876 Query 69996 CGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGT 70055 || || || | || || || ||||||||||| | || | || | || | ||| || Sbjct 314877 AGCGTTGAACAGAGTCGGGGAGGCGTGAGTGAAGTACTTCTGGGACATCAAGTGGTAGGT 314936 Query 70056 TTCAATAGCTGATTCTATATC-CCACTGATGAATTCCTATCGCGACACGCATCAACATAT 70114 || || || || || || | || | || || || | || |||||||||| || | Sbjct 314937 CTCGATGGCCTTCTCGATGTCACTACCG-TGGATACCAACGGCAACACGCATCAGCAGGT 314995 Query 70115 GCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTT 70174 |||| || || || || || || || |||||||||||| ||||| || | Sbjct 314996 GCTGGGGACGCTCAGCCACCTTTCCGTTGATCCGCAACAGGTATGACCGCTCCAGGGTCT 315055 Query 70175 TAAACCCAAAATAGTTGTA--TGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTTT 70232 | || || || ||||||| ||||| || | ||||| | |||| | || || || | Sbjct 315056 TGAAGCCGAAGAAGTTGTAGTTGAAA--TCACGGTCGTATACAATAGCCGAGTTAAGCTC 315113 Query 70233 ATC 70235 ||| Sbjct 315114 ATC 315116 >seq20 Length=3442689 Score = 100 bits (110), Expect = 4e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 39608 AACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAA 39667 |||| | ||| |||||||| || || ||||| || | | || | ||||| || Sbjct 3347119 AACAGCAGGCAAGCGAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAG 3347060 Query 39668 AATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCA 39727 || ||||| |||||||| ||||||||||| |||||||| || |||| ||| || || || Sbjct 3347059 AAGGTGAGACCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCGAAGGAACCG 3347000 Query 39728 GAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAG 39765 || |||||||| || || || || || || ||||| || Sbjct 3346999 GAGAAGAAGATACCCTCAACGGCAGCGAAAGCAACGAG 3346962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908602513720