Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aspergillus_20niger_20[genbank_20GCA_5F002211485.1_202017-06-30] 23 sequences; 35,738,354 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq4 158 3e-33 seq9 122 2e-22 seq6 98.7 2e-15 seq5 86.0 1e-11 >seq4 Length=2618736 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||||||||| |||||||||||||| |||| ||||| |||| ||| || | ||||| Sbjct 1670431 AGGACAAGGTGAAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAAGGTACGGCCATCC 1670490 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | |||||| ||||||||||| | || || ||||| || || || |||||||||||| Sbjct 1670491 TCCAACTGCTTACCAGCGAAGATCAAACGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCT 1670550 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| || || || ||||| || | ||| || || || ||||||||| Sbjct 1670551 TGAATCTTGGTCTTAACGTTATCAATTGTGTCGGAAGATTCAACTTCCAATGTGATCGTC 1670610 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||| | ||| || | ||| | ||||| Sbjct 1670611 TTTCCCGTGAGAGTCTTGACGAAGATCTGCAT 1670642 Score = 140 bits (154), Expect = 8e-28 Identities = 145/190 (76%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || |||||||| ||||| | ||||| || | || || | ||||| Sbjct 1670659 AGGACGAGGTGAAGGGTGGATTCCTTTTGAATGTTGTAGTCAGACAGGGTACGGCCATCC 1670718 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| || || || ||||| || ||||| || |||||||| Sbjct 1670719 TCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 1670778 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||||||| ||||||||||| || | ||||| || | ||||| ||| Sbjct 1670779 TGAATCTTGGTCTTCACATTGTCGATGGTGTCAGAAGACTCCACCTCAAGGGTGATGGTC 1670838 Query 225682 TTGCCCGTCA 225691 || || |||| Sbjct 1670839 TTTCCGGTCA 1670848 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| |||||| || || |||| |||||||||| | || | |||||| Sbjct 1670203 AGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAATCGGAGAGCGTACGTCCATCT 1670262 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | |||||| ||||||||||| || || || ||||| || ||||| || ||||| ||| Sbjct 1670263 TCCAACTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTATCT 1670322 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| || || ||||| || ||| | ||||| || | ||| |||||| Sbjct 1670323 TGAATCTTAGTCTTGACGTTATCAATGGTATCCGAGCTCTCCACCTCCAGCGTAATCGTC 1670382 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | ||| || | ||| | ||||| Sbjct 1670383 TTGCCGGTAAGAGTCTTCACGAAGATCTGCAT 1670414 >seq9 Length=53465 Score = 122 bits (134), Expect = 2e-22 Identities = 192/273 (70%), Gaps = 3/273 (1%) Strand=Plus/Plus Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATT 7500 || ||||| ||||| |||| || || ||| | ||||||| ||||||| | || Sbjct 22572 ACTTTATACTTAATGTTTGCATTATTCTCAGGTTTATTAGGTACAGCATTTTCTGTACTT 22631 Query 7501 ATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTAC 7560 ||||| ||||||||| ||| || ||| |||| ||| || | ||| |||| | || Sbjct 22632 ATAAGATTAGAATTATCTGGACCTGGTGTTCAA-TATATAGCTG--ATAACCAATTATAT 22688 Query 7561 AACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATG 7620 || ||| || || || ||||| || | ||||||||||| | |||||||| | | | Sbjct 22689 AATAGTATAATAACAGCTCATGCTATTATGATGATTTTCTTCATGGTTATGCCAGCTTTA 22748 Query 7621 ATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTT 7680 || || || ||||| |||| || | || ||| | | || | |||||||||||| || Sbjct 22749 ATCGGAGGATTCGGTAATTTCTTATTACCATTATTAGTAGGAGGTCCTGATATGGCATTC 22808 Query 7681 CCAAGGCTTAACAATATAAGTTTTTGATTACTA 7713 || || | || ||||| ||||| |||||| || Sbjct 22809 CCTAGATTAAATAATATTAGTTTCTGATTATTA 22841 >seq6 Length=3823878 Score = 98.7 bits (108), Expect = 2e-15 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| ||||| ||| || || | ||||| || |||||||| |||||||||||| Sbjct 2954841 TTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAGATA 2954782 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 || || || || || || || ||||| |||||||| |||||||| ||| || ||| Sbjct 2954781 AGACGCTGCTGATCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCG 2954722 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 |||||||| | || ||||| | || || ||||| ||||| Sbjct 2954721 ATGGTGTCGCTCGACTCGACGTCGAGGGTAATGGTCTTACCCGT 2954678 >seq5 Length=3766731 Score = 86.0 bits (94), Expect = 1e-11 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | |||||| ||||| || || |||| ||||| || | | ||| | || || Sbjct 1993524 AGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTACGGCCGTCC 1993583 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| || || || ||||| || || ||||| ||||||||| Sbjct 1993584 TCGAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCT 1993643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192530848575962