Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aspergillus_20niger_20[genbank_20GCA_5F002211485.1_202017-06-30] 23 sequences; 35,738,354 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq4 181 2e-40 seq6 125 1e-23 seq5 105 1e-17 >seq4 Length=2618736 Score = 181 bits (200), Expect = 2e-40 Identities = 179/229 (78%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG- 282930 ||||||||| || ||||| || || || | ||| |||||| |||||||||||||| | Sbjct 1670415 ACCACCACGGAGACGAAGGACAAGGTGAAGAGTGGATTCTTTCTGGATGTTGTAGTCGGA 1670474 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 |||| || ||||||||||| | || || || || ||||||||||| || ||||| | Sbjct 1670475 CAAG-GTACGGCCATCCTCCAACTGCTTACCAGCGAAGATCAAACGCTGCTGGTCCGGGG 1670533 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 | || || ||||||||||| ||||| | || ||| |||| || ||||| |||| ||| | Sbjct 1670534 GGATGCCTTCCTTGTCTTGAATCTTGGTCTTAACGTTATCAATTGTGTCGGAAGATTCAA 1670593 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||| | ||||||||||| ||||| | |||||| ||||| |||||||| Sbjct 1670594 CTTCCAATGTGATCGTCTTTCCCGTGAGAGTCTTGACGAAGATCTGCAT 1670642 Score = 159 bits (176), Expect = 7e-34 Identities = 168/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| ||||| || || || | ||| ||| ||||| ||||||||||||| Sbjct 1670643 ACCACCACGCAGACGAAGGACGAGGTGAAGGGTGGATTCCTTTTGAATGTTGTAGTCAGA 1670702 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||||||||| || || || || || ||||||| ||| || ||||| || Sbjct 1670703 CAGGGTACGGCCATCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCCGGGGG 1670762 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| || ||||| | || || | ||||| ||||| |||| || || Sbjct 1670763 AATGCCCTCCTTGTCCTGAATCTTGGTCTTCACATTGTCGATGGTGTCAGAAGACTCCAC 1670822 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATA 283092 || || ||||| ||||| || |||| ||||| |||| || Sbjct 1670823 CTCAAGGGTGATGGTCTTTCCGGTCAGGGTCTTGACGACTA 1670863 Score = 147 bits (162), Expect = 5e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || || ||||| | || || || ||||||||||||||| Sbjct 1670944 ACCACCACGCAGGCGGAGGACAAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCACT 1671003 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 |||||||||||||||||| || || || ||||| ||||||| ||| || ||||| || Sbjct 1671004 AAGCGTGCGGCCATCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCGGGAGG 1671063 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || |||||||| || |||||||| | || ||| | ||||| || || | ||||| Sbjct 1671064 GATGCCCTCCTTATCCTGGATCTTGGTCTTGACGTTGTCGATGGTATCGCTGGACTCGAC 1671123 Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075 ||||| ||||| ||||| || || Sbjct 1671124 CTCGAGGGTGATTGTCTTGCCGGT 1671147 Score = 143 bits (158), Expect = 6e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || || || ||||| || | ||||| || || ||||||||||| || | Sbjct 1670188 CCGCCACGGAGACGGAGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAATCGGAG 1670247 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||| || ||||| || | || || || || ||||| | ||| || ||||| ||| Sbjct 1670248 AGCGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGGGGA 1670307 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCT-TCGAC 283051 || |||||||| ||||| ||||| | || ||| |||| || || |||| |||| || || Sbjct 1670308 ATGCCCTCCTTATCTTGAATCTTAGTCTTGACGTTATCAATGGTATCCG-AGCTCTCCAC 1670366 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || |||||||| || || | |||||| ||||| |||||||| Sbjct 1670367 CTCCAGCGTAATCGTCTTGCCGGTAAGAGTCTTCACGAAGATCTGCAT 1670414 >seq6 Length=3823878 Score = 125 bits (138), Expect = 1e-23 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| || |||||||||||||| || || || || || ||||| Sbjct 2954841 TTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAGATA 2954782 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 | ||| || || || || |||||||||||||| |||||||| | || ||| | ||| Sbjct 2954781 AGACGCTGCTGATCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCG 2954722 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || ||||| | ||||| ||||| || || ||||||||||| | ||||| ||||| Sbjct 2954721 ATGGTGTCGCTCGACTCGACGTCGAGGGTAATGGTCTTACCCGTGAGGGTCTTGACGAA 2954663 >seq5 Length=3766731 Score = 105 bits (116), Expect = 1e-17 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || |||| || | ||| || || |||||||||||||| | Sbjct 1993508 ACCACCACGCAGGCGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGA 1993567 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || ||||| ||||| || || || || || ||||||| ||| || ||||| || Sbjct 1993568 AAGAGTACGGCCGTCCTCGAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCCGGGGG 1993627 Query 282992 AATACCCTCCTTGTCT 283007 ||||||||||||||| Sbjct 1993628 GATACCCTCCTTGTCT 1993643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738891539042