Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aspergillus_20oryzae_20[genbank_20GCA_5F002007945.1_202017-02-28] 25 sequences; 38,507,590 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq9 109 1e-18 seq6 98.7 2e-15 seq2 89.7 1e-12 >seq9 Length=2141799 Score = 109 bits (120), Expect = 1e-18 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 243526 GAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTC 243585 || ||||| ||| | |||||| |||| ||| ||| ||||||||||||| | | Sbjct 908551 GAGAAGGAGTTCCTGACTGACGCTCTTCCTTGCGCTCTTCTTGGCATGAACTCCAACTTG 908610 Query 243586 ATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAA 243645 ||| | |||||||| || ||||| |||||||| | | |||| ||||| | | || Sbjct 908611 ATGTGCCAGTACATTGAGTTCGTCGCCGACCGTCTCCTGGTCGCTCTTGGCAACAACAAG 908670 Query 243646 GTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACT 243705 | ||| ||| ||||| |||| ||| ||||| ||| || || || || || Sbjct 908671 TACTTCAATGCCACCAACCCATTTGACTTCATGGACAACATCTCCCTGGCCGGTAAGACC 908730 Query 243706 AACTTCTTCGAAAAGCGTGTCAGTGATTATCAACGCCCTGGTGTGATG 243753 ||||||||||| ||||||||| ||||||| || ||||||||||| Sbjct 908731 AACTTCTTCGAGAAGCGTGTCGGTGATTACCAGAAAGCTGGTGTGATG 908778 >seq6 Length=3136824 Score = 98.7 bits (108), Expect = 2e-15 Identities = 244/365 (67%), Gaps = 4/365 (1%) Strand=Plus/Plus Query 298087 GATAGGCGTGATGAACTTCTTCAAGAACCCTGGAATT-TCTAGAAGATTAGGGAAACAGC 298145 ||| ||||||||||||| | | |||| | || || || | ||| | || | || Sbjct 2772480 GATGGGCGTGATGAACTCGATGAGGAACTCGGGGATCCTCAACAAGCTCGGGAATTGGGC 2772539 Query 298146 TATGGAAAAAGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGTCA 298205 | || |||||||| |||| | ||| ||||||| || ||| |||| ||||||| Sbjct 2772540 T-TGCAAAAAGTTAATGAGCAAACCCTTGATGTGAGAACCATCATGATCCTGATCGGTCA 2772598 Query 298206 TGATCATCACATGACCGTAACGAAGCGAGGACGTGTCTTTGTACACTTTACCGGTTTGAA 298265 ||||||||| ||| || ||||| ||| || || |||| |||| | || | Sbjct 2772599 TGATCATCAGATGTCCATAACGCAGCCCACGGGTATCCGTGTATTCTTTCTTGTGCTGCA 2772658 Query 298266 GGCCGAGAATTTGTTTGA-GCGCTGTGATTTCTTCGTTCTTCGTGATGCTTGCCACGGAT 298324 || || | | ||||| | ||| ||||||| ||||||||| ||| | | | | Sbjct 2772659 ACCCAAGGAAGTTTTTGATGTTCTG-GATTTCTGCGTTCTTCGAGATCTGTTCGAAAGTG 2772717 Query 298325 GCATCGCGGACATTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCTCGCGACCG 298384 ||||| ||||| |||| || ||||| || || ||||| || ||| | || ||||| Sbjct 2772718 GCATCACGGACGTTCAGCAGCTTTCCTCGGAGGGGGAAAACACCAAAGAGATCCGGACCG 2772777 Query 298385 ACCACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGTCAGAATGAGA 298444 ||||| | | || || || || || | ||||| || || || |||||||| || Sbjct 2772778 ACCACCGCACGTCCAGCCATGGCCAGACCCTTGGCGGAGTCACCTTCTGTCAGAATCAGT 2772837 Query 298445 GTGCA 298449 ||||| Sbjct 2772838 GTGCA 2772842 >seq2 Length=4705242 Score = 89.7 bits (98), Expect = 1e-12 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 334143 TCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAGAGGGGAACCCTTCAAGCTGACCG 334202 ||||| || ||||| |||| || | ||||| |||||| || |||||||| || Sbjct 3394742 TCGTGCTCAACGTAGACAGTCTTGACCTCATCCTTCTTGGGGAAACCCTCAAGCTGCTCG 3394801 Query 334203 TTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCCGTTTGGCCCACACAGACCGTAG 334262 || ||||| ||||| ||||| | ||||| | ||||| || || |||||||| Sbjct 3394802 TTGTTGATAGCACGCATGAGAGTGGTCTTACCAGTACCGTTGGGACCGAGGAGACCGTAA 3394861 Query 334263 CGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAGAAGAATTTTTCCACCATATGCC 334322 || | ||||||||||| || | || | |||||| | || || ||||||| ||| Sbjct 3394862 CGCTGACCACGCTTCAGGCGGAGATGGGTCTGGTTCAGCAAGATCTTGGCACCATAGGCC 3394921 Query 334323 AGAGAAAATTCACAATCACACAGATCCTCACC 334354 || || || || | |||||||||||||| Sbjct 3394922 AGGGAGAACGTGCAGTTGCACAGATCCTCACC 3394953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102879646733750