Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aspergillus_20oryzae_20[genbank_20GCA_5F002007945.1_202017-02-28] 25 sequences; 38,507,590 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq9 116 5e-21 seq1 109 7e-19 >seq9 Length=2141799 Score = 116 bits (128), Expect = 5e-21 Identities = 281/422 (67%), Gaps = 10/422 (2%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || ||||| |||||||| |||||||||||||| || | ||| ||||| ||||| Sbjct 908759 TAATCACCGACACGCTTCTCGAAGAAGTTGGTCTTACCGGCCAGGGAGATGTTGTCCATG 908700 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCA--AATGGGTGGCACCCCAACTTGTTTGAGGAGAC 122488 ||||||||||| || | || || | | | | || || || ||||||| Sbjct 908699 AAGTCAAATGGGTTGGTGGCATTGAAGTACTTGTTGTTGCC--AAGAGCGACCAGGAGAC 908642 Query 122489 GATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 122548 | || | || |||||||||||| | ||||| | |||||||| || | || | Sbjct 908641 GGTCGGCGACGAACTCAATGTACTGGCACATCAAGTTGGAGTTCATGCCAAGAAGAGCGC 908582 Query 122549 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 122608 | || || ||||| | |||| | |||||||| || || || |||||| ||| Sbjct 908581 AAGGAAGAGCGTCAGTCAGGAACTCCTTCTCAATGGAGACAGCTTC---CACGATAACGT 908525 Query 122609 GG---ATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACT 122665 | | | | | ||| | || || | ||||||| ||||| | Sbjct 908524 CCTCCACAATCTGAGGGTCGGGGCGGTTGTTCAGGTGCGAGAAGAGCAGGCAAGCAAAGT 908465 Query 122666 CCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGA 122725 | ||||||||||||||| || || ||||| || || ||||| ||||| ||||| | Sbjct 908464 CAGTGTGGAGACCCTCATCACGAGAGATAAGCTCGTTGGAGAATGTAAGACCGGGCATCA 908405 Query 122726 GACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCA 122785 || |||||||||| ||| | |||| | ||| || |||||||||||||||||||| | Sbjct 908404 AGCCACGCTTCTTCAGCCAGAAGATAGAGGCGAAGGATCCGGAGAAGAAGATACCCTCAA 908345 Query 122786 CA 122787 || Sbjct 908344 CA 908343 >seq1 Length=5043372 Score = 109 bits (120), Expect = 7e-19 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 111289 || ||||| | || || | ||||| ||||| ||||||| | | |||||||| | Sbjct 2375591 GGCAGGGCAAGAGAGGCAAGGTTGCAGACAGCAACCTCATCCGGAGCAGTGTACTCAATG 2375532 Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349 ||||| ||||| | |||||| || ||||| |||| ||||| ||||| ||||| || Sbjct 2375531 ATTTCAGTACAGAGGTTGGAGCTGCGGATCGTTCCCAGGTTCTTCTGGTTGCTCTTTCTG 2375472 Query 111350 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATA 111409 || || ||||||||||| |||||| | || | || ||||| ||||| | | |||||| Sbjct 2375471 TTACAGGCATCCTTGTACAGCATGAAAGGATTTCCAGTCTCGGTCTGAGCCTCCAGAATA 2375412 Query 111410 GCCTTCCA 111417 || | ||| Sbjct 2375411 GCATACCA 2375404 Score = 84.2 bits (92), Expect = 3e-11 Identities = 203/307 (66%), Gaps = 9/307 (3%) Strand=Plus/Minus Query 111473 TAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAG 111532 ||||| || ||||| || ||||| | |||| | || || |||| || |||||| Sbjct 2375291 TAGAGTGCCTCAAATTCGTCACCATAAACATCGGCCAAGCCAGGGGCCTCGTTAGGACAG 2375232 Query 111533 AAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGG 111592 || |||| ||| | || | ||||| ||||||||||| | ||| ||| |||| ||| Sbjct 2375231 AAGAGAGTCCAGTCGCCGTTGGCTTCAACTCGCTTCATGAACAAGTCCGGAGTCCAGAGG 2375172 Query 111593 GATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGG 111652 | | |||||||| | | | || || | ||| ||||| || | || ||| Sbjct 2375171 GCATAGAAGAGATCGCGGGCTCTCACTTCCTCTTTACCGTGGTTCTTGCGGAGATCGAGG 2375112 Query 111653 AACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC 111712 ||||| | || ||| |||||||| ||||| | || | || | || || | ||||| Sbjct 2375111 AACTCGAAGACATCGGCGTGCCAAGGCTCCAAGTAAATGGCAAAAGCACC---TGGACGC 2375055 Query 111713 ------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATA 111766 || | || | |||||| | || ||| ||| || || || ||||| |||| | Sbjct 2375054 TTGTTTCCTCCCTGGTCTACATATCTGGCAGTGTTGTTGAACACCCGGAGCATGGGAACA 2374995 Query 111767 ATACCAT 111773 ||||||| Sbjct 2374994 ATACCAT 2374988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031803740000