Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aspergillus_20oryzae_20[genbank_20GCA_5F002214955.1_202017-07-05] 77 sequences; 37,128,894 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq7 149 6e-31 seq2 107 2e-18 >seq7 Length=2086428 Score = 149 bits (164), Expect = 6e-31 Identities = 308/450 (68%), Gaps = 19/450 (4%) Strand=Plus/Minus Query 52396 AGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCA 52455 |||| | |||||||||||| || ||||| | || || ||||| ||||||| | | Sbjct 1171733 AGCGTCTCGTGGCCTTCGCCGCTGTTGAGGGTATCTTCTTCTCCGGATCCTTTGCCTCTA 1171674 Query 52456 TCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATAT 52515 |||| | | || | | ||| | |||||||| || || ||| ||||||| | || | Sbjct 1171673 TCTTCTGGCTGAAGAAGCGTGGCTTGATGCCCGGTCTTACATTCTCCAACGAGCTTATCT 1171614 Query 52516 CGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGCGTGACCG 52575 | || || || || || ||||| |||||||| ||||| || | ||| | ||| | Sbjct 1171613 CTCGTGATGAGGGTCTCCACACTGACTTTGCTTGCCTGCTCTTCT---CGCACCTGAAC- 1171558 Query 52576 AAAAATTGGATTCGGACAC---GATCCTG-AGCATGTT--CAAGGAGGCGGTGGCTATCG 52629 || | | ||| | ||| || || | ||| | ||| || || | || | Sbjct 1171557 ---AACCGCC--CCGACCCTCAGATTGTGGAGGACGTTATCGTGGAAGCTGTCTCCATTG 1171503 Query 52630 AAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCA 52689 | |||||||| | || | ||| || || || || || ||||||||| | | | | Sbjct 1171502 AGAAGGAGTTCCTGACTGACGCTCTTCCTTGCGCTCTTCTTGGCATGAACTCCAACTTGA 1171443 Query 52690 TGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCG-GGCAGCCA-AA 52747 ||||| ||||||| ||||| || || || ||||| |||| |||| |||| | | || Sbjct 1171442 TGTGCCAGTACATTGAGTTCGTCGCCGACCGTCTCCTGGTC--GCTCTTGGCAACAACAA 1171385 Query 52748 GTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGAC 52807 ||||||||| || ||| || ||||| || ||| ||||||| || || | || ||||| Sbjct 1171384 GTACTTCAATGCCACCAACCCATTTGACTTCATGGACAACATCTCCCTGGCCGGTAAGAC 1171325 Query 52808 CAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 |||||| ||||||||||| ||||| || || Sbjct 1171324 CAACTTCTTCGAGAAGCGTGTCGGTGATTA 1171295 >seq2 Length=3801342 Score = 107 bits (118), Expect = 2e-18 Identities = 156/217 (72%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || ||||| |||| ||| || || | | || ||||| |||||||||||||| | Sbjct 3207299 CCACCACGCAAGCGCAGAACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCCGAC 3207358 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| ||||||||| || ||||| | |||| | |||||| ||||| || || Sbjct 3207359 AGAGTACGACCGTCCTCGAGCTGCTTACCAGCGAAGATCAAACGCTGCTGGTCGGGGGGA 3207418 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||||||||| || |||| | |||| ||| || | ||| ||| | ||||| | Sbjct 3207419 ATGCCTTCTTTGTC-CTGGATTTTGCTCTTAACGTTG-TCGATGGTATCGCTTGACTCAA 3207476 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 |||| | || | || || ||||| || || || || Sbjct 3207477 CCTCAAGGGTGATAGTCTTTCCAGTGAGGGTCTTCAC 3207513 Score = 95.1 bits (104), Expect = 1e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 |||| || |||||||||||||||| || || ||||| || || ||||||| ||| Sbjct 2556032 CCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCAAGCTGCTTACCGGCGAAGA 2555973 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTT 138544 | |||||||| ||||| || || ||||| || ||||| ||| || || | | | Sbjct 2555972 TCAGACGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGT 2555913 Query 138545 CCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAA 138604 | | ||||||| ||||||| || |||| || | || ||||| || || || || || | Sbjct 2555912 CGATGGTGTCGCTCGACTCAACGTCGAGGGTAATGGTCTTACCCGTGAGGGTCTTGACGA 2555853 Query 138605 AA 138606 || Sbjct 2555852 AA 2555851 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || || |||||||| ||| || ||| || || ||||| || || |||| Sbjct 3207104 GACTCTTTCTGGATGTTGTAATCGGACAAAGTGCGGCCATCTTCGAGCTGCTTGCCGGCG 3207163 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | || |||||||| ||||| ||||| || || ||||| || ||| | |||| || | Sbjct 3207164 AAAATGAGACGCTGCTGGTCAGGAGGAATTCCCTCTTTATCT-TGAATCTTTGACTTCAC 3207222 Query 138541 TGT-TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | ||||||| || || ||||| | ||| | || || || || ||||| || Sbjct 3207223 ATTATCGATCGTGTCGGATGATTCAACCTCCAGCGTAATTGTCTTTCCGGTGAGAGTCTT 3207282 Query 138600 TACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 3207283 GACGAAAATCTGCAT 3207297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496261922347440