Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aspergillus_20oryzae_20[genbank_20GCA_5F002214965.1_202017-07-05] 93 sequences; 36,974,910 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq3 223 5e-53 seq6 102 1e-16 >seq3 Length=2648250 Score = 223 bits (246), Expect = 5e-53 Identities = 600/909 (66%), Gaps = 14/909 (2%) Strand=Plus/Plus Query 71944 TCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGAC 72003 || || ||||| || || ||| | | || ||||| || || ||||| | | | | Sbjct 243046 TCAAATTCGTCACCATAAACATCGGCCAAGCCAGGGGCCTCGTTAGGACAGAAGAGAGTC 243105 Query 72004 CACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 72062 || || || | | | ||||| ||||| || | || ||| |||| || || ||| || Sbjct 243106 CAGTCGCCGTTGGCTTCAACTCGCTTCATGAACAAGTCCGGAGTCCAGAGGGC-ATAGAA 243164 Query 72063 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 72122 ||||| | || ||| ||||| || || ||||| |||||||||||| | | Sbjct 243165 GAGATCGCGGGCTCTCACTTCCTCTTTACCGTGGTTCTTGCGGAGATCGAGGAACTCGAA 243224 Query 72123 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCC 72182 | ||| | ||||| || |||||||| ||||| | | | || || || ||||||||||| Sbjct 243225 GACATCGGCGTGCCAAGGCTCCAAGTAAATGGCAAAAGCACCTGGACGCTTGTTTCCTCC 243284 Query 72183 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 72242 ||| |||| ||||| || ||||| || | || | | ||| |||| |||||||||||| Sbjct 243285 CTGGTCTACATATCTGGCAGTGTTGTTGAACACCCGGAGCATGGGAACAATACCATTGGA 243344 Query 72243 TGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGCTAATTGATAGA 72300 | ||| ||||| || || ||| || | ||||| || ||| |||| ||| Sbjct 243345 GGAACCGTTGGTACCACCAATGTAGGAGCCGGTAGCACGGATGCGGTGCACATTG--AGA 243402 Query 72301 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 72360 || ||||| || || | || ||||| ||||| ||| || | ||| ||||| || || Sbjct 243403 CCGATTCCACCAGCGGTCTTCGAGATCAATGCACATGTCTTGAGCGTGTCATAAATACCT 243462 Query 72361 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 72420 || || ||||| ||| |||| | | ||||| || || | || | || || Sbjct 243463 TCGATGCTATCCTCCTTCATATCGACAAGAAAGCATGAAGCAAGCTGAGGCTGAGGGGTA 243522 Query 72421 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTAC 72480 || ||||| || || || || || || || || || | || | ||||| | | || Sbjct 243523 CCAGCATTGAACAAAGTCGGCGAGGCATGGGTGAAATACTTCTGAGACATCAAGTGATAG 243582 Query 72481 GTCTCAATAGCTGATTCTATATCCCATT--GATGTATTCCTACCGCGACACGCATTAACA 72538 ||||| ||||| |||| || |||| ||| || || || | ||||||||| || | Sbjct 243583 GTCTCGATAGC--CTTCTCAATGTCATTACCATGAATACCAACAGAGACACGCATCAAAA 243640 Query 72539 TATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAG 72598 |||||||| | |||| | | ||| || || | |||||| || || | || Sbjct 243641 GGTGCTGAGGACGTTCAGCAACCTTTCCATCAATCCGAAGCAAGTATGACCGCTCAAGAG 243700 Query 72599 TTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAG 72656 | || || || ||| ||||||| ||||| || || ||||| | |||| | || ||||| Sbjct 243701 TCTTGAAGCCGAAAAAGTTGTAGTTGAAA--TCGCGGTCGTACACAATAGCGGAGTTGAG 243758 Query 72657 TTTATCCTTATATTTGTTAACTATATCCATGGTGATACTTGAAATAATCGGAGAATGTTT 72716 || || || ||| | ||||| || || |||| || || || | | |||| Sbjct 243759 TTCGTCGGCATGTTTCATGACTATCTCGTACGTTTCCTTTGATATCATTGGGGCAGGTTT 243818 Query 72717 CCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttt 72776 | ||| || || || | || | | ||| || || || ||| | || || Sbjct 243819 CTTATTCTTTGGGTTGATGTAATGGTATAGGTCTGAAATAACCAGGGAGAATTGCTTCTT 243878 Query 72777 tGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATG 72836 ||||| |||||| || || || || ||||| | || || |||||||| || |||||||| Sbjct 243879 TGTTTGCTTGTGAAGGTTCGAAACAGCTATACGAGCAGCAAGAATGGCGTAGTCTGGATG 243938 Query 72837 TTGTGTAGT 72845 | ||||| Sbjct 243939 TGTGGTAGT 243947 >seq6 Length=2060378 Score = 102 bits (112), Expect = 1e-16 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 42079 GTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 42138 ||| ||||||||||| | | || | |||||||| || || || |||||||| | ||| Sbjct 1145709 GTGGAGACCCTCATCACGAGAGATAAGCTCGTTGGAGAATGTAAGACCGGGCATCAAGCC 1145768 Query 42139 ACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGC 42198 |||||| || ||||| || ||||| ||||| ||||| || |||||||| || || || || Sbjct 1145769 ACGCTTCTTCAGCCAGAAGATAGAGGCAAAGGATCCGGAGAAGAAGATACCCTCAACAGC 1145828 Query 42199 CGCAAAGGC 42207 || ||||| Sbjct 1145829 GGCGAAGGC 1145837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138419800680