Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aspergillus_20oryzae_20[genbank_20GCA_5F002214965.1_202017-07-05] 93 sequences; 36,974,910 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq6 149 6e-31 seq1 107 2e-18 >seq6 Length=2060378 Score = 149 bits (164), Expect = 6e-31 Identities = 308/450 (68%), Gaps = 19/450 (4%) Strand=Plus/Minus Query 52396 AGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCA 52455 |||| | |||||||||||| || ||||| | || || ||||| ||||||| | | Sbjct 1145848 AGCGTCTCGTGGCCTTCGCCGCTGTTGAGGGTATCTTCTTCTCCGGATCCTTTGCCTCTA 1145789 Query 52456 TCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATAT 52515 |||| | | || | | ||| | |||||||| || || ||| ||||||| | || | Sbjct 1145788 TCTTCTGGCTGAAGAAGCGTGGCTTGATGCCCGGTCTTACATTCTCCAACGAGCTTATCT 1145729 Query 52516 CGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGCGTGACCG 52575 | || || || || || ||||| |||||||| ||||| || | ||| | ||| | Sbjct 1145728 CTCGTGATGAGGGTCTCCACACTGACTTTGCTTGCCTGCTCTTCT---CGCACCTGAAC- 1145673 Query 52576 AAAAATTGGATTCGGACAC---GATCCTG-AGCATGTT--CAAGGAGGCGGTGGCTATCG 52629 || | | ||| | ||| || || | ||| | ||| || || | || | Sbjct 1145672 ---AACCGCC--CCGACCCTCAGATTGTGGAGGACGTTATCGTGGAAGCTGTCTCCATTG 1145618 Query 52630 AAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCA 52689 | |||||||| | || | ||| || || || || || ||||||||| | | | | Sbjct 1145617 AGAAGGAGTTCCTGACTGACGCTCTTCCTTGCGCTCTTCTTGGCATGAACTCCAACTTGA 1145558 Query 52690 TGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCG-GGCAGCCA-AA 52747 ||||| ||||||| ||||| || || || ||||| |||| |||| |||| | | || Sbjct 1145557 TGTGCCAGTACATTGAGTTCGTCGCCGACCGTCTCCTGGTC--GCTCTTGGCAACAACAA 1145500 Query 52748 GTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGAC 52807 ||||||||| || ||| || ||||| || ||| ||||||| || || | || ||||| Sbjct 1145499 GTACTTCAATGCCACCAACCCATTTGACTTCATGGACAACATCTCCCTGGCCGGTAAGAC 1145440 Query 52808 CAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 |||||| ||||||||||| ||||| || || Sbjct 1145439 CAACTTCTTCGAGAAGCGTGTCGGTGATTA 1145410 >seq1 Length=3471301 Score = 107 bits (118), Expect = 2e-18 Identities = 156/217 (72%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || ||||| |||| ||| || || | | || ||||| |||||||||||||| | Sbjct 258213 CCACCACGCAAGCGCAGAACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCCGAC 258154 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| ||||||||| || ||||| | |||| | |||||| ||||| || || Sbjct 258153 AGAGTACGACCGTCCTCGAGCTGCTTACCAGCGAAGATCAAACGCTGCTGGTCGGGGGGA 258094 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||||||||| || |||| | |||| ||| || | ||| ||| | ||||| | Sbjct 258093 ATGCCTTCTTTGTC-CTGGATTTTGCTCTTAACGTTG-TCGATGGTATCGCTTGACTCAA 258036 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 |||| | || | || || ||||| || || || || Sbjct 258035 CCTCAAGGGTGATAGTCTTTCCAGTGAGGGTCTTCAC 257999 Score = 95.1 bits (104), Expect = 1e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 |||| || |||||||||||||||| || || ||||| || || ||||||| ||| Sbjct 909350 CCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCAAGCTGCTTACCGGCGAAGA 909409 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTT 138544 | |||||||| ||||| || || ||||| || ||||| ||| || || | | | Sbjct 909410 TCAGACGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGT 909469 Query 138545 CCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAA 138604 | | ||||||| ||||||| || |||| || | || ||||| || || || || || | Sbjct 909470 CGATGGTGTCGCTCGACTCAACGTCGAGGGTAATGGTCTTACCCGTGAGGGTCTTGACGA 909529 Query 138605 AA 138606 || Sbjct 909530 AA 909531 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || || |||||||| ||| || ||| || || ||||| || || |||| Sbjct 258408 GACTCTTTCTGGATGTTGTAATCGGACAAAGTGCGGCCATCTTCGAGCTGCTTGCCGGCG 258349 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | || |||||||| ||||| ||||| || || ||||| || ||| | |||| || | Sbjct 258348 AAAATGAGACGCTGCTGGTCAGGAGGAATTCCCTCTTTATCT-TGAATCTTTGACTTCAC 258290 Query 138541 TGT-TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | ||||||| || || ||||| | ||| | || || || || ||||| || Sbjct 258289 ATTATCGATCGTGTCGGATGATTCAACCTCCAGCGTAATTGTCTTTCCGGTGAGAGTCTT 258230 Query 138600 TACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 258229 GACGAAAATCTGCAT 258215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496261823094960