Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07- 15] 688 sequences; 35,593,152 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq6 84.2 5e-11 >seq6 Length=466476 Score = 84.2 bits (92), Expect = 5e-11 Identities = 173/255 (68%), Gaps = 2/255 (1%) Strand=Plus/Plus Query 319783 TCAATGATAGCCGTGTTAGAATCGGACCCGTCGAGATCGTGTTCCACGTAAGCAGTTTTC 319842 |||||| ||| | | | || ||| | | ||| || ||||| || ||| || |||| || Sbjct 204503 TCAATGGTAGTCATTTCAGTATCAGCCGAGTCAAGGTCGTGCTCGACGAAAACAGTCTTG 204562 Query 319843 AAAACA-TCCGCAGAGGGGAACCCTTCAAGCTGGCCGTTCACAATAGCGCGCATCAGGGT 319901 | | || || ||| || ||||||| || | || ||||| ||||| || || Sbjct 204563 ACTTCGCTCTGCTT-GGGAAAACCTTCAACTTGCTCATTATTGATAGCTCGCATGAGAGT 204621 Query 319902 TGATTTACCCGCCCCGTTTGGCCCACACAGACCGTAGCGGTTTCCGCGTTTCAGGTTGAA 319961 || || || | ||||| || |||||||||||||| || | || || ||||| || Sbjct 204622 AGACTTTCCAGATCCGTTGGGACCACACAGACCGTAACGCTGACCACGCTTCAGACGCAA 204681 Query 319962 CCGCGTGTTGTTCAGAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAG 320021 | || | ||| |||||||| || | || || |||||||| || ||| | || || Sbjct 204682 GTGAGTTTGGTTGAGAAGAATCTTGGCGCCGTAAGCCAGAGAGAAGGTACAGTTGCAGAG 204741 Query 320022 ATCCTCACCGACTTC 320036 |||||| || |||| Sbjct 204742 ATCCTCGCCCTCTTC 204756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057814675281440