Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07- 15] 688 sequences; 35,593,152 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq60 123 3e-23 >seq60 Length=156840 Score = 123 bits (136), Expect = 3e-23 Identities = 201/287 (70%), Gaps = 3/287 (1%) Strand=Plus/Plus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || || || ||||| | || ||| |||| ||||| ||||||||||| ||||| Sbjct 140322 ATGTAGGTGTCGATTAAGAGAGAGTATGTTTCCGAGTGGATGTTCTCCATCATGATCTGG 140381 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGA 17353 |||||||||||||| || || || | | ||| ||||| || ||| || || | | Sbjct 140382 AATCCGTAAAAGCAACGAGCCTCAGGGACTTGGACTTCACCGCTGAAGCGCTCAACCAAG 140441 Query 17354 TTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATAT 17413 || ||||| |||||||||||| || || ||||| |||| ||| || ||||| ||| Sbjct 140442 TTCTCGTTGACGATGCCGTCGGAAGCAGCAAAAAATGCCAGTATGTGGGAGATGAAGTAT 140501 Query 17414 TTTTCGTC--CGGT-GTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCT 17470 || ||||| | | | || | |||||| | |||||||| || | ||| | ||| Sbjct 140502 TTCTCGTCATCATTCAGACGATTGTTCCAGTCGTGCAAATCTTTTGACAGATCGATCTCT 140561 Query 17471 TCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAAT 17517 |||| ||||| || |||| | |||||||| ||||| | ||| || Sbjct 140562 TCGGCCGTCCAGAAGGAAGCCTCGGCCTTTTTGTACATTTGCCAGAT 140608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517541149107840