Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07- 15] 688 sequences; 35,593,152 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq60 141 1e-28 >seq60 Length=156840 Score = 141 bits (156), Expect = 1e-28 Identities = 188/259 (73%), Gaps = 3/259 (1%) Strand=Plus/Plus Query 16500 TTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTA 16559 |||| ||||| |||||||| || ||||| ||||| || ||||| |||||||| | | Sbjct 140350 TTTCCGAGTGGATGTTCTCCATCATGATCTGGAATCCGTAAAAGCAACGAGCCTCAGGGA 140409 Query 16560 TTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAG 16619 ||| ||||| || || || || ||| |||||| || ||||| ||||| |||| Sbjct 140410 CTTGGACTTCACCGCTGAAGCGCTCAACCAAGTTCTCGTTGACGATGCCGTCGGAAGCAG 140469 Query 16620 CAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCA-GAT--GTAAGAATATGCC 16676 ||||||| |||| |||||| ||||| ||||| |||||| || | || | | || Sbjct 140470 CAAAAAATGCCAGTATGTGGGAGATGAAGTATTTCTCGTCATCATTCAGACGATTGTTCC 140529 Query 16677 AATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCT 16736 | || | |||||||| || | ||| | ||||| | |||||| ||| |||| | |||| Sbjct 140530 AGTCGTGCAAATCTTTTGACAGATCGATCTCTTCGGCCGTCCAGAAGGAAGCCTCGGCCT 140589 Query 16737 TTTTATACATTTTCCAAAT 16755 |||| ||||||| ||| || Sbjct 140590 TTTTGTACATTTGCCAGAT 140608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511410001836160