Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07-
15] 688 sequences; 35,593,152 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq203 159 4e-34
seq60 123 3e-23
>seq203
Length=54532
Score = 159 bits (176), Expect = 4e-34
Identities = 460/703 (65%), Gaps = 10/703 (1%)
Strand=Plus/Plus
Query 53981 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 54040
|| || ||||| | || ||||||| | ||| || |||| | | || || |||||
Sbjct 7256 CCGGGGCATTCGTTGGGGCACATCAGAGTCCAATCACCGTTCTTTTCGACACGCTTCATG 7315
Query 54041 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 54100
|| ||||| |||||||||||||| | |||| ||| | | || ||| || || ||
Sbjct 7316 AAAAGATCGGGAATCCAAAGAGCAAGGAATAAATCACGAGCTCGGACTTCTTCCTTACCG 7375
Query 54101 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 54160
|||||| | ||| |||||| | | | ||| | ||||| || |||||||| |||
Sbjct 7376 TGGTTCTTTCGCAAATCAAGGAACTCAAACACATCGGCGTGCCAAGGCTCCAAGTAAATG 7435
Query 54161 GTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 54220
| | | ||||| || ||||| || ||||| || | ||||| || ||||| || ||
Sbjct 7436 GCAAATGCACCAGGTCGCTTGTTGCCACCCTGGTCAACATATCTGGCAGTGTTGTTGAAA 7495
Query 54221 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 54280
|| | | ||| ||||| | ||||||||| | || ||||| || | || || |||
Sbjct 7496 ACACGAAGCATGGGAATGACACCATTGGACGTGCCGTTGGTGCCTGCAATGTAAGAGCCA 7555
Query 54281 CTGGCACGAATA--TTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATG 54338
|||| |||||| | ||| | || || || || || ||||| || ||||| | |
Sbjct 7556 GTGGCGCGAATACGGTGGACATTCA-AG-CCGATACCACCAGCCATCTTGGAGATCATGG 7613
Query 54339 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 54398
|||| || | ||| ||||||||||| || || || || ||| |||||| || || |
Sbjct 7614 CGCAGGTCTTGAGCGTGTCATAGATGCCTTCGATGCTGTCCTCCTTCATGTCAACGAGGA 7673
Query 54399 AACAGCTAGACATTTGGTGAC---GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 54455
||| |||| | |||| || || || || || || | || || || || |
Sbjct 7674 ---AGCAAGACGACAGCTGACATTGAGGTGTGCCAGCGTTGAAGAGTGTGGGCGAGGCAT 7730
Query 54456 GCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATT 54515
| ||||| ||| || | |||| ||| || || | || || |||| |
Sbjct 7731 GTGTAAAGAGTTTGCTGGACATGAGATGGTAGGTTTCCAGGACTCGCTCAATATTGTCTC 7790
Query 54516 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGT 54575
|| || || || |||||||| | |||||| || || | || || |||||| ||
Sbjct 7791 CCCAGATACCGACAGCAACACGCATAATCATGTGTTGGGGCCGCTCGACAATCTTGCCGT 7850
Query 54576 TTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 54635
| | ||| || | || || || ||||| || || ||||| || | ||| ||||
Sbjct 7851 TGAGTTTGAGAAGATATGACCGCTCTAAAGTCTTGAAGCCAAAGTACTGGTAGTTGAAGT 7910
Query 54636 CTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTT 54678
||| || || | ||| | |||| ||||| ||| | | |||
Sbjct 7911 CTCTGTCATAGACAATGGCGGAGTCGAGTTCCTCCCTGTGTTT 7953
>seq60
Length=156840
Score = 123 bits (136), Expect = 3e-23
Identities = 295/442 (67%), Gaps = 12/442 (3%)
Strand=Plus/Plus
Query 23844 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 23903
|| || || ||||| || || || || || ||||| || || || | ||||| || ||
Sbjct 139702 TTCTGATACTCACCAACTCGCTTCTCAAAGAAATTTGTCTTGCCGCCCAATGAGATGTTC 139761
Query 23904 TCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATT-CAGAAAT 23962
|||||||| || | ||||||| ||||| | ||| | | |||| || |
Sbjct 139762 TCCATGAAGTCAAAAGGATTGGCCGTCTTATACAC-CTTCTCGTTACCAAGAGCAACGAG 139820
Query 23963 CAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 24022
|| | ||| || |||||||| || || ||||||| | |||||| || | ||
Sbjct 139821 CAGGCGATCGGCCACAAACTCAATGTACTGCTTCATCAATGTGGCATTCATGCCCAGTAG 139880
Query 24023 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 24082
| ||| | |||| |||| ||||| ||||| || || | ||| || ||||| |||||
Sbjct 139881 AGCACATGGCAAAGCCTCAGTCAGAAACTCTTGCTCGATGGTGACAGCATCTGTAATAAT 139940
Query 24083 A-----GATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACAT 24137
|||| | ||| || | ||||||| | | | | || || ||| ||
Sbjct 139941 CTGTTGGATCAT-CTGCTTGCTGGCTCGGTGCTTCAAGTGAGAGTG----CAGCAAGCAG 139995
Query 24138 GCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCG 24197
|| || || ||| | ||||| || | |||||||||||||| || ||||| |||
Sbjct 139996 GCAAAGTCTGTGTGCAAGCCCTCATCACGCGAGATTAATTCGTTGGAGAAGGTGAGACCG 140055
Query 24198 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATT 24257
||||| | ||||||||| || ||||| || || || ||||| | || ||||||||
Sbjct 140056 GGCATCAAGCCACGCTTCTTCAGCCAGAAGATAGAAGCAAAAGCACCGCTGAAGAAAATA 140115
Query 24258 CCTTCTACTGCCGCAAAGGCAA 24279
||||| || || ||||| ||||
Sbjct 140116 CCTTCCACAGCAGCAAAAGCAA 140137
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593716493994240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |