Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07- 15] 688 sequences; 35,593,152 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq203 159 4e-34 seq60 123 3e-23 >seq203 Length=54532 Score = 159 bits (176), Expect = 4e-34 Identities = 460/703 (65%), Gaps = 10/703 (1%) Strand=Plus/Plus Query 53981 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 54040 || || ||||| | || ||||||| | ||| || |||| | | || || ||||| Sbjct 7256 CCGGGGCATTCGTTGGGGCACATCAGAGTCCAATCACCGTTCTTTTCGACACGCTTCATG 7315 Query 54041 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 54100 || ||||| |||||||||||||| | |||| ||| | | || ||| || || || Sbjct 7316 AAAAGATCGGGAATCCAAAGAGCAAGGAATAAATCACGAGCTCGGACTTCTTCCTTACCG 7375 Query 54101 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 54160 |||||| | ||| |||||| | | | ||| | ||||| || |||||||| ||| Sbjct 7376 TGGTTCTTTCGCAAATCAAGGAACTCAAACACATCGGCGTGCCAAGGCTCCAAGTAAATG 7435 Query 54161 GTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 54220 | | | ||||| || ||||| || ||||| || | ||||| || ||||| || || Sbjct 7436 GCAAATGCACCAGGTCGCTTGTTGCCACCCTGGTCAACATATCTGGCAGTGTTGTTGAAA 7495 Query 54221 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 54280 || | | ||| ||||| | ||||||||| | || ||||| || | || || ||| Sbjct 7496 ACACGAAGCATGGGAATGACACCATTGGACGTGCCGTTGGTGCCTGCAATGTAAGAGCCA 7555 Query 54281 CTGGCACGAATA--TTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATG 54338 |||| |||||| | ||| | || || || || || ||||| || ||||| | | Sbjct 7556 GTGGCGCGAATACGGTGGACATTCA-AG-CCGATACCACCAGCCATCTTGGAGATCATGG 7613 Query 54339 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 54398 |||| || | ||| ||||||||||| || || || || ||| |||||| || || | Sbjct 7614 CGCAGGTCTTGAGCGTGTCATAGATGCCTTCGATGCTGTCCTCCTTCATGTCAACGAGGA 7673 Query 54399 AACAGCTAGACATTTGGTGAC---GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 54455 ||| |||| | |||| || || || || || || | || || || || | Sbjct 7674 ---AGCAAGACGACAGCTGACATTGAGGTGTGCCAGCGTTGAAGAGTGTGGGCGAGGCAT 7730 Query 54456 GCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATT 54515 | ||||| ||| || | |||| ||| || || | || || |||| | Sbjct 7731 GTGTAAAGAGTTTGCTGGACATGAGATGGTAGGTTTCCAGGACTCGCTCAATATTGTCTC 7790 Query 54516 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGT 54575 || || || || |||||||| | |||||| || || | || || |||||| || Sbjct 7791 CCCAGATACCGACAGCAACACGCATAATCATGTGTTGGGGCCGCTCGACAATCTTGCCGT 7850 Query 54576 TTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 54635 | | ||| || | || || || ||||| || || ||||| || | ||| |||| Sbjct 7851 TGAGTTTGAGAAGATATGACCGCTCTAAAGTCTTGAAGCCAAAGTACTGGTAGTTGAAGT 7910 Query 54636 CTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTT 54678 ||| || || | ||| | |||| ||||| ||| | | ||| Sbjct 7911 CTCTGTCATAGACAATGGCGGAGTCGAGTTCCTCCCTGTGTTT 7953 >seq60 Length=156840 Score = 123 bits (136), Expect = 3e-23 Identities = 295/442 (67%), Gaps = 12/442 (3%) Strand=Plus/Plus Query 23844 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 23903 || || || ||||| || || || || || ||||| || || || | ||||| || || Sbjct 139702 TTCTGATACTCACCAACTCGCTTCTCAAAGAAATTTGTCTTGCCGCCCAATGAGATGTTC 139761 Query 23904 TCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATT-CAGAAAT 23962 |||||||| || | ||||||| ||||| | ||| | | |||| || | Sbjct 139762 TCCATGAAGTCAAAAGGATTGGCCGTCTTATACAC-CTTCTCGTTACCAAGAGCAACGAG 139820 Query 23963 CAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 24022 || | ||| || |||||||| || || ||||||| | |||||| || | || Sbjct 139821 CAGGCGATCGGCCACAAACTCAATGTACTGCTTCATCAATGTGGCATTCATGCCCAGTAG 139880 Query 24023 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 24082 | ||| | |||| |||| ||||| ||||| || || | ||| || ||||| ||||| Sbjct 139881 AGCACATGGCAAAGCCTCAGTCAGAAACTCTTGCTCGATGGTGACAGCATCTGTAATAAT 139940 Query 24083 A-----GATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACAT 24137 |||| | ||| || | ||||||| | | | | || || ||| || Sbjct 139941 CTGTTGGATCAT-CTGCTTGCTGGCTCGGTGCTTCAAGTGAGAGTG----CAGCAAGCAG 139995 Query 24138 GCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCG 24197 || || || ||| | ||||| || | |||||||||||||| || ||||| ||| Sbjct 139996 GCAAAGTCTGTGTGCAAGCCCTCATCACGCGAGATTAATTCGTTGGAGAAGGTGAGACCG 140055 Query 24198 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATT 24257 ||||| | ||||||||| || ||||| || || || ||||| | || |||||||| Sbjct 140056 GGCATCAAGCCACGCTTCTTCAGCCAGAAGATAGAAGCAAAAGCACCGCTGAAGAAAATA 140115 Query 24258 CCTTCTACTGCCGCAAAGGCAA 24279 ||||| || || ||||| |||| Sbjct 140116 CCTTCCACAGCAGCAAAAGCAA 140137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593716493994240