Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07-
15] 688 sequences; 35,593,152 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq245 159 4e-34
seq60 156 4e-33
seq303 129 6e-25
seq1 93.3 4e-14
>seq245
Length=42083
Score = 159 bits (176), Expect = 4e-34
Identities = 178/235 (76%), Gaps = 2/235 (1%)
Strand=Plus/Plus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|| ||||| || ||||| || || |||||||| || || |||||| |||| || || |
Sbjct 31650 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTCGAGGTGGAGTCT 31709
Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805
|||||| | | | |||| ||||| || || | ||||| |||||||| ||| ||||
Sbjct 31710 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGA 31768
Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865
|||||| |||||||||| || ||||| ||||| || || | |||||||| ||||||
Sbjct 31769 CCAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGGCCGACTA 31828
Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920
|||||||||||||||| ||| ||||| | ||| ||||| || | || || |||
Sbjct 31829 CAACATCCAGAAGGAGAGCACTCTGCACTTGGTGCTGCGCCTGCGTGGTGGTGGC 31883
>seq60
Length=156840
Score = 156 bits (172), Expect = 4e-33
Identities = 206/285 (72%), Gaps = 3/285 (1%)
Strand=Plus/Minus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||||||||||||||| || |||||||| | ||| ||| | || |||
Sbjct 140608 ATCTGGCAAATGTACAAAAAGGCCGAGGCTTCCTTCTGGACGGCCGAAGAGATCGATCTG 140549
Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752
|| || || | ||||||| | || |||| || ||||| | ||||||
Sbjct 140548 TCAAAAGATTTGCACGACTGGAACAATCGTCTGAATGATGACGAGAAATACTTCATCTCC 140489
Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812
||| | ||||| ||||| || || ||||||||||||||||||||| |||| |||||
Sbjct 140488 CACATACTGGCATTTTTTGCTGCTTCCGACGGCATCGTCAACGAGAACTTGGTTGAGCGC 140429
Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872
||| || || || || | ||||| || ||||| ||||| || |||||| |||
Sbjct 140428 TTCAGCGGTGAAGTCCAAGTCCCTGAGGCTCGTTGCTTTTACGGATTCCAGATCATGATG 140369
Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917
|||||| | |||||||||| || || | | |||||||| |||
Sbjct 140368 GAGAACATCCACTCGGAAACATACTCTCTCTTAATCGACACCTAC 140324
Score = 113 bits (124), Expect = 5e-20
Identities = 299/454 (66%), Gaps = 2/454 (0%)
Strand=Plus/Minus
Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041
||||||| || ||||| | |||||||| | || ||| || ||||| | |||||
Sbjct 140200 AGAAGGCAGAATGGGCTATCCGCTGGATTCAGGACAAAGAATCCAGCTTCGCCCAGCGCT 140141
Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101
|||| || || || || || || || | ||||| || ||| || | || || |
Sbjct 140140 TGGTTGCTTTTGCTGCTGTGGAAGGTATTTTCTTCAGCGGTGCTTTTGCTTCTATCTTCT 140081
Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161
|||| ||||| || ||| | |||||||| || || ||| |||||| | ||||| | |
Sbjct 140080 GGCTGAAGAAGCGTGGCTTGATGCCCGGTCTCACCTTCTCCAACGAATTAATCTCGCGTG 140021
Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGA 117221
| ||||| |||| ||||||||||| |||||| | || ||| ||| ||| | |
Sbjct 140020 ATGAGGGCTTGCACACAGACTTTGCCTGCTTGCTGCACTCTCACTTGAAGCACCGAGCCA 139961
Query 117222 GCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCA 117281
|| | | || |||| | || || || ||| |||||||||| || || |
Sbjct 139960 GCAAGCAGATGATCCAACAGATTATTACAGATGCTGTCACCATCGAGCAAGAGTTTCTGA 139901
Query 117282 CCGAAGCGCTGCC-GGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATC 117340
| || || |||| |||| ||| ||||| | ||| | | |||| ||| |||||
Sbjct 139900 CTGAGGCTTTGCCATGTGC-TCTACTGGGCATGAATGCCACATTGATGAAGCAGTACATT 139842
Query 117341 GAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCC 117400
||||| || ||||| | ||||| | | || | || ||| || || ||| ||
Sbjct 139841 GAGTTTGTGGCCGATCGCCTGCTCGTTGCTCTTGGTAACGAGAAGGTGTATAAGACGGCC 139782
Query 117401 AACCCGCTGGACTTTATGAACCTCATCTCCTTGG 117434
|| || | ||||| ||| | |||||| ||||
Sbjct 139781 AATCCTTTTGACTTCATGGAGAACATCTCATTGG 139748
>seq303
Length=27345
Score = 129 bits (142), Expect = 6e-25
Identities = 158/216 (73%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| ||||| || || ||||| |||||||| | || ||||| | |
Sbjct 10976 ATGCAAATTTTCGTCAAAACCCTTACCGGCAAGACCATCACTCTTGAGGTCGAGTCATCT 11035
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | ||||| || |||| ||||| ||||| |||||| | || ||
Sbjct 11036 GACACCATCGACAATGTCAAGACCAAGATTCAGGACAAGGAGGGGATCCCCCCCGATCAA 11095
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || || |||| || || || ||||| || |||| ||||||||| |||||||||
Sbjct 11096 CAGCGTCTGATCTTTGCTGGAAAGCAGCTTGAGGACGGCCGCACCCTCGCAGACTACAAC 11155
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905
|| ||||||||| | || || ||||| ||| | |||
Sbjct 11156 ATTCAGAAGGAGTCTACTCTTCATCTTGTGCTCCGC 11191
Score = 98.7 bits (108), Expect = 1e-15
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || ||||| || || ||||||||| |||| || || | |
Sbjct 11493 ATGCAGATCTTCGTCAAGACCCTCACAGGAAAGACCATCACCCTCGAGGTGGAGTCGTCT 11552
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | || || |||| || || || ||||| || | || |||
Sbjct 11553 GACACTATAGACAATGTGAAAACGAAGATTCAAGATAAGGAAGGCATTCCTCCCGATCAG 11612
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || || |||| ||| || || ||||| || || | || || || |||||||||
Sbjct 11613 CAGCGTCTTATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGGACACTTGCAGACTACAAC 11672
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|||||||||||| | || ||||| | |||||||| ||| | || ||
Sbjct 11673 ATCCAGAAGGAGTCAACTTTGCATTTGGTGTTGCGTTTGCGTGGTGG 11719
Score = 96.9 bits (106), Expect = 4e-15
Identities = 158/229 (69%), Gaps = 18/229 (8%)
Strand=Plus/Plus
Query 40697 TATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC---------CA 40747
|| |||| || || | || || || ||||||||| |||| || || | ||
Sbjct 11272 TAGTCGTCAAGACTTTGACCGGAAAGACCATCACCCTCGAGGTGGAGTCTTCTGATACCA 11331
Query 40748 CCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807
||||| |||| |||| |||| |||| || || || |||||||| | ||||
Sbjct 11332 TCGACAACGTGAAAAC---CAAG------ATTCAAGATAAGGAAGGCATCCCTCCCGACC 11382
Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867
|||| || || || | ||| || || |||||||| || | || || ||| ||| ||||
Sbjct 11383 AGCAGCGTCTGATTTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACGCTCGCCGATTACA 11442
Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|||||||||||||| |||| || ||||| || | ||| | | |||||
Sbjct 11443 ACATCCAGAAGGAGTCCACACTTCATCTTGTTCTCCGCCTTCGTGGCGG 11491
>seq1
Length=703770
Score = 93.3 bits (102), Expect = 4e-14
Identities = 129/181 (71%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758
|| || || || || ||||| || ||||||||| | || ||||| || | |||| |
Sbjct 263377 TTTGTGAAGACCCTGACGGGTAAGACCATCACCTTGGAGGTCGAGTCCTCGGACACGATC 263436
Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| | |||| || |||| || || |||||||||||| | |||||||| ||| |
Sbjct 263437 GACAATGTCAAATCCAAGATTCAGGATAAGGAGGGCATCCCCCCTGACCAGCAGCGATTG 263496
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|||| || ||||| ||||| || || | || ||||| |||||||| |||||||||
Sbjct 263497 ATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGAACCCTGGCAGACTACAATATCCAGAAG 263556
Query 40879 G 40879
|
Sbjct 263557 G 263557
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515214769114880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |