Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07- 15] 688 sequences; 35,593,152 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq245 159 4e-34 seq60 156 4e-33 seq303 129 6e-25 seq1 93.3 4e-14 >seq245 Length=42083 Score = 159 bits (176), Expect = 4e-34 Identities = 178/235 (76%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || |||||||| || || |||||| |||| || || | Sbjct 31650 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTCGAGGTGGAGTCT 31709 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| | | | |||| ||||| || || | ||||| |||||||| ||| |||| Sbjct 31710 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGA 31768 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| |||||||||| || ||||| ||||| || || | |||||||| |||||| Sbjct 31769 CCAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGGCCGACTA 31828 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920 |||||||||||||||| ||| ||||| | ||| ||||| || | || || ||| Sbjct 31829 CAACATCCAGAAGGAGAGCACTCTGCACTTGGTGCTGCGCCTGCGTGGTGGTGGC 31883 >seq60 Length=156840 Score = 156 bits (172), Expect = 4e-33 Identities = 206/285 (72%), Gaps = 3/285 (1%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||||||||||||||| || |||||||| | ||| ||| | || ||| Sbjct 140608 ATCTGGCAAATGTACAAAAAGGCCGAGGCTTCCTTCTGGACGGCCGAAGAGATCGATCTG 140549 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 || || || | ||||||| | || |||| || ||||| | |||||| Sbjct 140548 TCAAAAGATTTGCACGACTGGAACAATCGTCTGAATGATGACGAGAAATACTTCATCTCC 140489 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||| | ||||| ||||| || || ||||||||||||||||||||| |||| ||||| Sbjct 140488 CACATACTGGCATTTTTTGCTGCTTCCGACGGCATCGTCAACGAGAACTTGGTTGAGCGC 140429 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| || || || || | ||||| || ||||| ||||| || |||||| ||| Sbjct 140428 TTCAGCGGTGAAGTCCAAGTCCCTGAGGCTCGTTGCTTTTACGGATTCCAGATCATGATG 140369 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 |||||| | |||||||||| || || | | |||||||| ||| Sbjct 140368 GAGAACATCCACTCGGAAACATACTCTCTCTTAATCGACACCTAC 140324 Score = 113 bits (124), Expect = 5e-20 Identities = 299/454 (66%), Gaps = 2/454 (0%) Strand=Plus/Minus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041 ||||||| || ||||| | |||||||| | || ||| || ||||| | ||||| Sbjct 140200 AGAAGGCAGAATGGGCTATCCGCTGGATTCAGGACAAAGAATCCAGCTTCGCCCAGCGCT 140141 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||| || || || || || || || | ||||| || ||| || | || || | Sbjct 140140 TGGTTGCTTTTGCTGCTGTGGAAGGTATTTTCTTCAGCGGTGCTTTTGCTTCTATCTTCT 140081 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| || ||| | |||||||| || || ||| |||||| | ||||| | | Sbjct 140080 GGCTGAAGAAGCGTGGCTTGATGCCCGGTCTCACCTTCTCCAACGAATTAATCTCGCGTG 140021 Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGA 117221 | ||||| |||| ||||||||||| |||||| | || ||| ||| ||| | | Sbjct 140020 ATGAGGGCTTGCACACAGACTTTGCCTGCTTGCTGCACTCTCACTTGAAGCACCGAGCCA 139961 Query 117222 GCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCA 117281 || | | || |||| | || || || ||| |||||||||| || || | Sbjct 139960 GCAAGCAGATGATCCAACAGATTATTACAGATGCTGTCACCATCGAGCAAGAGTTTCTGA 139901 Query 117282 CCGAAGCGCTGCC-GGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATC 117340 | || || |||| |||| ||| ||||| | ||| | | |||| ||| ||||| Sbjct 139900 CTGAGGCTTTGCCATGTGC-TCTACTGGGCATGAATGCCACATTGATGAAGCAGTACATT 139842 Query 117341 GAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCC 117400 ||||| || ||||| | ||||| | | || | || ||| || || ||| || Sbjct 139841 GAGTTTGTGGCCGATCGCCTGCTCGTTGCTCTTGGTAACGAGAAGGTGTATAAGACGGCC 139782 Query 117401 AACCCGCTGGACTTTATGAACCTCATCTCCTTGG 117434 || || | ||||| ||| | |||||| |||| Sbjct 139781 AATCCTTTTGACTTCATGGAGAACATCTCATTGG 139748 >seq303 Length=27345 Score = 129 bits (142), Expect = 6e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| || || ||||| |||||||| | || ||||| | | Sbjct 10976 ATGCAAATTTTCGTCAAAACCCTTACCGGCAAGACCATCACTCTTGAGGTCGAGTCATCT 11035 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || |||| ||||| ||||| |||||| | || || Sbjct 11036 GACACCATCGACAATGTCAAGACCAAGATTCAGGACAAGGAGGGGATCCCCCCCGATCAA 11095 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || || || ||||| || |||| ||||||||| ||||||||| Sbjct 11096 CAGCGTCTGATCTTTGCTGGAAAGCAGCTTGAGGACGGCCGCACCCTCGCAGACTACAAC 11155 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 || ||||||||| | || || ||||| ||| | ||| Sbjct 11156 ATTCAGAAGGAGTCTACTCTTCATCTTGTGCTCCGC 11191 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| || || ||||||||| |||| || || | | Sbjct 11493 ATGCAGATCTTCGTCAAGACCCTCACAGGAAAGACCATCACCCTCGAGGTGGAGTCGTCT 11552 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | || || |||| || || || ||||| || | || ||| Sbjct 11553 GACACTATAGACAATGTGAAAACGAAGATTCAAGATAAGGAAGGCATTCCTCCCGATCAG 11612 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| || || ||||| || || | || || || ||||||||| Sbjct 11613 CAGCGTCTTATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGGACACTTGCAGACTACAAC 11672 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| | || ||||| | |||||||| ||| | || || Sbjct 11673 ATCCAGAAGGAGTCAACTTTGCATTTGGTGTTGCGTTTGCGTGGTGG 11719 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/229 (69%), Gaps = 18/229 (8%) Strand=Plus/Plus Query 40697 TATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC---------CA 40747 || |||| || || | || || || ||||||||| |||| || || | || Sbjct 11272 TAGTCGTCAAGACTTTGACCGGAAAGACCATCACCCTCGAGGTGGAGTCTTCTGATACCA 11331 Query 40748 CCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 ||||| |||| |||| |||| |||| || || || |||||||| | |||| Sbjct 11332 TCGACAACGTGAAAAC---CAAG------ATTCAAGATAAGGAAGGCATCCCTCCCGACC 11382 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || || || | ||| || || |||||||| || | || || ||| ||| |||| Sbjct 11383 AGCAGCGTCTGATTTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACGCTCGCCGATTACA 11442 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||| |||| || ||||| || | ||| | | ||||| Sbjct 11443 ACATCCAGAAGGAGTCCACACTTCATCTTGTTCTCCGCCTTCGTGGCGG 11491 >seq1 Length=703770 Score = 93.3 bits (102), Expect = 4e-14 Identities = 129/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 || || || || || ||||| || ||||||||| | || ||||| || | |||| | Sbjct 263377 TTTGTGAAGACCCTGACGGGTAAGACCATCACCTTGGAGGTCGAGTCCTCGGACACGATC 263436 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | |||| || |||| || || |||||||||||| | |||||||| ||| | Sbjct 263437 GACAATGTCAAATCCAAGATTCAGGATAAGGAGGGCATCCCCCCTGACCAGCAGCGATTG 263496 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| || ||||| ||||| || || | || ||||| |||||||| ||||||||| Sbjct 263497 ATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGAACCCTGGCAGACTACAATATCCAGAAG 263556 Query 40879 G 40879 | Sbjct 263557 G 263557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515214769114880