Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07- 15] 688 sequences; 35,593,152 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq303 131 1e-25 seq245 123 2e-23 seq1 87.8 2e-12 >seq303 Length=27345 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || || || || | ||||||||| || | || ||||| || || |||||||| || Sbjct 11719 CCACCACGCAAACGCAACACCAAATGCAAAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 11660 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || || |||||||||||| ||||||||| |||| |||||||||||||||||||| Sbjct 11659 AGTGTCCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCGGGAGGA 11600 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 ||||| ||||| ||| ||| || ||| || | || | ||||| | ||| ||| Sbjct 11599 ATGCCTTCCTTATCTTGAATCTTCGTTTTCACATTGTCTATAGTGTCAGACGACTCCACC 11540 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| ||| | || || || || || || || || || |||||||| Sbjct 11539 TCGAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 11493 Score = 123 bits (136), Expect = 2e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 |||||||| || ||||||||||| || | ||||| ||||| ||||| |||||| Sbjct 11172 GTAGACTCCTTCTGAATGTTGTAGTCTGCGAGGGTGCGGCCGTCCTCAAGCTGCTTTCCA 11113 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| |||||||| |||||||| || || ||||||||||| ||| || || Sbjct 11112 GCAAAGATCAGACGCTGTTGATCGGGGGGGATCCCCTCCTTGTCCTGAATCTTGGTCTTG 11053 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| |||||| | ||||||||| | || | || |||||||| || ||| Sbjct 11052 ACATTGTCGATGGTGTCAGATGACTCGACCTCAAGAGTGATGGTCTTGCCGGTAAGGGTT 10993 Query 118722 TTTACAAAAATCTGCATG 118739 || || ||||| |||||| Sbjct 10992 TTGACGAAAATTTGCATG 10975 Score = 107 bits (118), Expect = 2e-18 Identities = 142/196 (72%), Gaps = 1/196 (1%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| || | ||| ||||| || || |||||||||||| | || || ||| || | Sbjct 11472 CAAGATGAAGTGTGGACTCCTTCTGGATGTTGTAATCGGCGAGCGTACGGCCATCTTCCA 11413 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| || |||||| | || ||||||||||| |||||||| ||||| ||||| ||| || Sbjct 11412 GCTGCTTACCAGCGAAAATCAGACGCTGCTGGTCGGGAGGGATGCCTTCCTTATCTTGAA 11353 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || ||| || | |||| ||| || | ||| ||||||| ||| | || || | Sbjct 11352 TCTTGGTTTTCACGTTGTCGATGGTATCAGAAGACTCCACCTCGAGGGTGATGGTCTTTC 11293 Query 118711 CGGTCAGAGTTTTTAC 118726 |||||| ||| || || Sbjct 11292 CGGTCAAAGTCTTGAC 11277 >seq245 Length=42083 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||||||| | || ||| || || |||||||| ||| || ||||| ||| Sbjct 31865 CAGCACCAAGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATC 31806 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||||||||| || ||||| ||||||| |||||||| || || || |||||||||||||| Sbjct 31805 CTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 31746 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | |||| |||||| | ||| ||||||| ||| | ||| Sbjct 31745 CTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATCGT 31686 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || || || ||||||||||| Sbjct 31685 CTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 31653 >seq1 Length=703770 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 118583 ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642 |||||| ||||| || ||||| |||| | |||||||| || || || ||||||||||| Sbjct 263523 ATCCTCAAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCAGGGGGGATGCCCTCCTT 263464 Query 118643 GTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCAC 118702 || ||| || ||| || | |||| ||||||| | ||||||||| | ||| | Sbjct 263463 ATCCTGAATCTTGGATTTGACATTGTCGATCGTGTCCGAGGACTCGACCTCCAAGGTGAT 263404 Query 118703 CGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 || || || ||||| || || |||||| Sbjct 263403 GGTCTTACCCGTCAGGGTCTTCACAAAA 263376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433826762332096