Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07- 15] 688 sequences; 35,593,152 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq245 140 4e-28 seq303 136 5e-27 seq1 96.9 4e-15 >seq245 Length=42083 Score = 140 bits (154), Expect = 4e-28 Identities = 164/219 (75%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| |||||| |||| ||||||||||| || || ||||| || ||||| || || | Sbjct 31867 CGCAGCACCAAGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCA 31808 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| ||||| || ||||||||||||||||| | || | || ||||||| Sbjct 31807 TCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTG 31748 Query 43089 TCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 ||| ||| || |||| ||| | | | |||||| || ||||| |||| ||||| Sbjct 31747 TCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGAT 31689 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 || || ||||| || ||||| || || || ||||| || Sbjct 31688 CGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 31650 >seq303 Length=27345 Score = 136 bits (150), Expect = 5e-27 Identities = 172/234 (74%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 42951 TATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAA 43010 || ||||| || | |||||||||||||||||||| || |||||| || || ||||| Sbjct 11725 TACTGTCCACCACGCAAACGCAACACCAAATGCAAAGTTGACTCCTTCTGGATGTTGTAG 11666 Query 43011 TCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCG 43070 || || || ||||| | || || |||||||| |||||||| || || |||||||| ||| Sbjct 11665 TCTGCAAGTGTCCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCG 11606 Query 43071 GCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGA 43129 | || | || ||||| | | ||| | || |||| | | | | | ||||| ||| Sbjct 11605 GGAGGAATGCCTTCCTTAT-CTTGAATCTTCGTTTTCACATTGTCTATAGTGTCAGACGA 11547 Query 43130 TTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| |||| |||||||| || || || || ||||| || ||||| ||||| Sbjct 11546 CTCCACCTCGAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 11493 Score = 93.3 bits (102), Expect = 5e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42980 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 43039 ||| | |||| |||||| || || |||||||| || || || || | || || ||||| Sbjct 11468 ATGAAGTGTGGACTCCTTCTGGATGTTGTAATCGGCGAGCGTACGGCCATCTTCCAGCTG 11409 Query 43040 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTT 43099 |||||||||||| || || ||||||||||||| || | || ||||| | | ||| | | Sbjct 11408 CTTACCAGCGAAAATCAGACGCTGCTGGTCGGGAGGGATGCCTTCCTTAT-CTTGAATCT 11350 Query 43100 TTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCG 43158 | |||| ||| | | | || || || ||||| |||| |||||||| || || | Sbjct 11349 TGGTTTTCACGTTGTCGATGGTATCAGAAGACTCCACCTCGAGGGTGATGGTCTTTCCGG 11290 Query 43159 TTAGCGTCTTTAC 43171 | | ||||| || Sbjct 11289 TCAAAGTCTTGAC 11277 >seq1 Length=703770 Score = 96.9 bits (106), Expect = 4e-15 Identities = 132/182 (73%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 |||| || |||||||| || ||||| || || | || || |||||||| ||||| || | Sbjct 263557 CCTTCTGGATATTGTAGTCTGCCAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGA 263498 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTC 43112 | | |||||||||||| | || | || |||||| ||| ||| | || | ||||| | Sbjct 263497 TCAATCGCTGCTGGTCAGGGGGGATGCCCTCCTTATCC-TGAATCTTGGATTTGACATTG 263439 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | |||||| || || || || | |||||||| || ||||| || ||||| ||| Sbjct 263438 TCGATCGTGTCCGAGGACTCGACCTCCAAGGTGATGGTCTTACCCGTCAGGGTCTTCACA 263379 Query 43173 AA 43174 || Sbjct 263378 AA 263377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571812682368640