Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07-
15] 688 sequences; 35,593,152 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq245 140 4e-28
seq303 136 5e-27
seq1 96.9 4e-15
>seq245
Length=42083
Score = 140 bits (154), Expect = 4e-28
Identities = 164/219 (75%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028
|||| |||||| |||| ||||||||||| || || ||||| || ||||| || || |
Sbjct 31867 CGCAGCACCAAGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCA 31808
Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088
|| || |||||||| ||||| || ||||||||||||||||| | || | || |||||||
Sbjct 31807 TCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTG 31748
Query 43089 TCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147
||| ||| || |||| ||| | | | |||||| || ||||| |||| |||||
Sbjct 31747 TCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGAT 31689
Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186
|| || ||||| || ||||| || || || ||||| ||
Sbjct 31688 CGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 31650
>seq303
Length=27345
Score = 136 bits (150), Expect = 5e-27
Identities = 172/234 (74%), Gaps = 2/234 (1%)
Strand=Plus/Minus
Query 42951 TATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAA 43010
|| ||||| || | |||||||||||||||||||| || |||||| || || |||||
Sbjct 11725 TACTGTCCACCACGCAAACGCAACACCAAATGCAAAGTTGACTCCTTCTGGATGTTGTAG 11666
Query 43011 TCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCG 43070
|| || || ||||| | || || |||||||| |||||||| || || |||||||| |||
Sbjct 11665 TCTGCAAGTGTCCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCG 11606
Query 43071 GCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGA 43129
| || | || ||||| | | ||| | || |||| | | | | | ||||| |||
Sbjct 11605 GGAGGAATGCCTTCCTTAT-CTTGAATCTTCGTTTTCACATTGTCTATAGTGTCAGACGA 11547
Query 43130 TTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
||||| |||| |||||||| || || || || ||||| || ||||| |||||
Sbjct 11546 CTCCACCTCGAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 11493
Score = 93.3 bits (102), Expect = 5e-14
Identities = 138/193 (72%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 42980 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 43039
||| | |||| |||||| || || |||||||| || || || || | || || |||||
Sbjct 11468 ATGAAGTGTGGACTCCTTCTGGATGTTGTAATCGGCGAGCGTACGGCCATCTTCCAGCTG 11409
Query 43040 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTT 43099
|||||||||||| || || ||||||||||||| || | || ||||| | | ||| | |
Sbjct 11408 CTTACCAGCGAAAATCAGACGCTGCTGGTCGGGAGGGATGCCTTCCTTAT-CTTGAATCT 11350
Query 43100 TTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCG 43158
| |||| ||| | | | || || || ||||| |||| |||||||| || || |
Sbjct 11349 TGGTTTTCACGTTGTCGATGGTATCAGAAGACTCCACCTCGAGGGTGATGGTCTTTCCGG 11290
Query 43159 TTAGCGTCTTTAC 43171
| | ||||| ||
Sbjct 11289 TCAAAGTCTTGAC 11277
>seq1
Length=703770
Score = 96.9 bits (106), Expect = 4e-15
Identities = 132/182 (73%), Gaps = 2/182 (1%)
Strand=Plus/Minus
Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053
|||| || |||||||| || ||||| || || | || || |||||||| ||||| || |
Sbjct 263557 CCTTCTGGATATTGTAGTCTGCCAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGA 263498
Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTC 43112
| | |||||||||||| | || | || |||||| ||| ||| | || | ||||| |
Sbjct 263497 TCAATCGCTGCTGGTCAGGGGGGATGCCCTCCTTATCC-TGAATCTTGGATTTGACATTG 263439
Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172
| | |||||| || || || || | |||||||| || ||||| || ||||| |||
Sbjct 263438 TCGATCGTGTCCGAGGACTCGACCTCCAAGGTGATGGTCTTACCCGTCAGGGTCTTCACA 263379
Query 43173 AA 43174
||
Sbjct 263378 AA 263377
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571812682368640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |