Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07- 15] 688 sequences; 35,593,152 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq245 123 2e-23 seq303 95.1 8e-15 >seq245 Length=42083 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | |||||||| ||| | ||| || || ||||| ||||||||||||| | Sbjct 31879 CCACCACGCAGGCGCAGCACCAAGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGCC 31820 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | ||||||||| || || ||||| ||||||||||| ||| Sbjct 31819 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCCGGGGGA 31760 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | | || | |||| || || || Sbjct 31759 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 31700 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | ||||| || || || ||||| || || || || ||||||||| Sbjct 31699 TCGAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATC 31652 >seq303 Length=27345 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||| || || | |||| || ||||| ||||||||||| | || ||| |||| Sbjct 11187 AGCACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCTGCGAGGGTGCGGCCGTCC 11128 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || || || || || ||||| || ||| ||| | | ||||||||| Sbjct 11127 TCAAGCTGCTTTCCAGCAAAGATCAGACGCTGTTGATCGGGGGGGATCCCCTCCTTGTCC 11068 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | | || | || | || ||||| || | |||||||| Sbjct 11067 TGAATCTTGGTCTTGACATTGTCGATGGTGTCAGATGACTCGACCTCAAGAGTGATGGTC 11008 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||| || ||||| || || || ||||| Sbjct 11007 TTGCCGGTAAGGGTTTTGACGAAAATTTGCAT 10976 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || |||| | || ||||| || ||||| || ||||| ||||||||||| | Sbjct 11720 TCCACCACGCAAACGCAACACCAAATGCAAAGTTGACTCCTTCTGGATGTTGTAGTCTGC 11661 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || ||| | || || | |||||| || ||||| || || |||||||| ||| || Sbjct 11660 AAGTGTCCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCGGGAGG 11601 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||| || ||||| || | || | |||| | || | ||| || || Sbjct 11600 AATGCCTTCCTTATCTTGAATCTTCGTTTTCACATTGTCTATAGTGTCAGACGACTCCAC 11541 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| || || ||||| || || || ||||||||||| Sbjct 11540 CTCGAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 11493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323069291041280