Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07- 15] 688 sequences; 35,593,152 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq60 118 1e-21 >seq60 Length=156840 Score = 118 bits (130), Expect = 1e-21 Identities = 183/259 (71%), Gaps = 3/259 (1%) Strand=Plus/Plus Query 16533 TTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATA 16592 |||| || || || |||||||| ||||| || || |||||||| | ||| || | | Sbjct 140350 TTTCCGAGTGGATGTTCTCCATCATGATCTGGAATCCGTAAAAGCAACGAGCCTCAGGGA 140409 Query 16593 TTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTG 16652 ||| |||||| | || | || | ||||| ||||| || || || ||| ||| | Sbjct 140410 CTTGGACTTCACCGCTGAAGCGCTCAACCAAGTTCTCGTTGACGATGCCGTCGGAAGCAG 140469 Query 16653 CAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATC--TGAAA-GTTTTAACC 16709 ||||||| || |||||||| || || | ||| |||| ||| | | | | || || Sbjct 140470 CAAAAAATGCCAGTATGTGGGAGATGAAGTATTTCTCGTCATCATTCAGACGATTGTTCC 140529 Query 16710 AGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCT 16769 |||| ||||||||||| | ||||| |||||| | ||||| || ||||| | |||| Sbjct 140530 AGTCGTGCAAATCTTTTGACAGATCGATCTCTTCGGCCGTCCAGAAGGAAGCCTCGGCCT 140589 Query 16770 TTTTATACATTTTCCATAT 16788 |||| ||||||| ||| || Sbjct 140590 TTTTGTACATTTGCCAGAT 140608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462508022396800