Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07-
15] 688 sequences; 35,593,152 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq245 123 2e-23
seq303 93.3 3e-14
>seq245
Length=42083
Score = 123 bits (136), Expect = 2e-23
Identities = 157/216 (73%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
||||||||||| |||||||||||||| |||||||||||| ||| ||| | || ||
Sbjct 31861 ACCAAGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCCTCG 31802
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || || || || || | ||||| ||||| || || | ||||||||||||
Sbjct 31801 AGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 31742
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | |||| | ||||||||| | ||| ||||||||
Sbjct 31741 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATCGTCTTC 31682
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCT 45343
||||| || ||||| || || || ||||| ||||||
Sbjct 31681 CCCGTGAGGGTCTTGACGAAAATCTGCATCTTGCCT 31646
>seq303
Length=27345
Score = 93.3 bits (102), Expect = 3e-14
Identities = 142/201 (71%), Gaps = 1/201 (0%)
Strand=Plus/Minus
Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204
||||||||||||||||||||| || ||| |||| || || || ||||| || ||
Sbjct 11167 CTCCTTCTGAATGTTGTAGTCTGCGAGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCAAA 11108
Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264
|||| |||||||| ||||| || | |||||||||||| ||| || ||| ||
Sbjct 11107 GATCAGACGCTGTTGATCGGGGGGGATCCCCTCCTTGTCCTGAATCTTGGTCTTGACATT 11048
Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324
| | | |||| ||| ||||| | || || |||||||| || || || || ||
Sbjct 11047 GTCGATGGTGTCAGATGACTCGACCTCAAGAGTGATGGTCTTGCCGGTAAGGGTTTTGAC 10988
Query 45325 AAAGATTTGCATG-TTGCCTC 45344
|| ||||||||| |||| ||
Sbjct 10987 GAAAATTTGCATGATTGCTTC 10967
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395071887294448
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |